| Creating the CIPRES Science Gateway for inference of large phylogenetic trees MA Miller, W Pfeiffer, T Schwartz 2010 Gateway Computing Environments Workshop (GCE), 1-8, 2010 | 13565 | 2010 |
| The CIPRES science gateway: a community resource for phylogenetic analyses MA Miller, W Pfeiffer, T Schwartz Proceedings of the 2011 TeraGrid Conference: extreme digital discovery, 1-8, 2011 | 572 | 2011 |
| A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway MA Miller, M. A., Schwartz, T., Pickett, B. E., He, S., Klem, E. B ... Evolutionary Bioinformatics 11, 43-48, 2015 | 544* | 2015 |
| Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline SA Lesley, P Kuhn, A Godzik, AM Deacon, I Mathews, A Kreusch, ... Proceedings of the National Academy of Sciences 99 (18), 11664-11669, 2002 | 509 | 2002 |
| The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources MA Miller, W Pfeiffer, T Schwartz Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 410 | 2012 |
| The CIPRES Portals. CIPRES MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ... World Wide Web electronic publication, www. phylo. org/sub_sections/portal 8 …, 2009 | 240 | 2009 |
| Dynamics of alpha-synuclein aggregation and inhibition of pore-like oligomer development by beta-synuclein. ME Tsigelny IF, Bar-On P, Sharikov Y, Crews L, Hashimoto M, Miller MA ... FEBS J. 274 (7), 1862, 2007 | 220 | 2007 |
| A framework for the design and reuse of grid workflows I Altintas, A Birnbaum, KK Baldridge, W Sudholt, M Miller, C Amoreira, ... International Workshop on Scientific Applications of Grid Computing, 120-133, 2004 | 132 | 2004 |
| T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life I Carbone, JB White, J Miadlikowska, AE Arnold, MA Miller, F Kauff, ... Bioinformatics 33 (8), 1160-1168, 2017 | 85 | 2017 |
| Mechanism of alpha-synuclein oligomerization and membrane interaction: theoretical approach to unstructured proteins studies. ME Tsigelny IF, Sharikov Y, Miller MA Nanomedicine 4 (4), 350-357, 2008 | 72* | 2008 |
| T-BAS version 2.1: Tree-Based Alignment Selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees I Carbone, JB White, J Miadlikowska, AE Arnold, MA Miller, N Magain, ... Microbiology resource announcements 8 (29), 2019 | 65 | 2019 |
| An All-Atom Model of the Structure of Human Copper Transporter 1 S Tsigelny, I., Sharikov, Y., Greenberg, J., Miller, M., Kouznetsova, V ... Cell Biochemistry and Biophysics 63 (223-234), 2012 | 54 | 2012 |
| MAPAS: a tool for predicting membrane-contacting protein surfaces. TIF Sharikov Y, Walker RC, Greenberg J, Kouznetsova V, Nigam SK, Miller MA ... Nature Methods. 5 (2), 119, 2008 | 26 | 2008 |
| SWAMI: integrating biological databases and analysis tools within user friendly environment R Rifaieh, R Unwin, J Carver, MA Miller International Conference on Data Integration in the Life Sciences, 48-58, 2007 | 24 | 2007 |
| Apache airavata sharing service: A tool for enabling user collaboration in science gateways S Nakandala, S Marru, M Piece, S Pamidighantam, K Yoshimoto, ... Proceedings of the Practice and Experience in Advanced Research Computing …, 2017 | 21 | 2017 |
| The CIPRES workbench: a flexible framework for creating science gateways A Miller, M. A., Schwartz, T., Hoover, P., Yoshimoto, K., Sivagnanam, S ... XSEDE 2015 Conference: Scientific Advancements Enabled by Enhanced …, 2015 | 19 | 2015 |
| Measuring success for a future vision: Defining impact in science gateways/virtual research environments P Calyam, N Wilkins‐Diehr, M Miller, EH Brookes, R Arora, A Chourasia, ... Concurrency and Computation: Practice and Experience, 2020 | 18 | 2020 |
| Grid workflow software for a high-throughput proteome annotation pipeline A Birnbaum, J Hayes, WW Li, MA Miller, PW Arzberger, PE Bourne, ... International Life Science Grid Workshop, 68-81, 2004 | 15 | 2004 |
| Embedding CIPRES science gateway capabilities in phylogenetics software environments. W Miller, M. A., Schwartz, T., and Pfeiffer Conference on Extreme Science and Engineering Discovery Environment: Gateway …, 2013 | 10 | 2013 |
| Authoring a science gateway cookbook S Marru, R Dooley, N Wilkins-Diehr, M Pierce, M Miller, S Pamidighantam, ... 2013 IEEE International Conference on Cluster Computing (CLUSTER), 1-3, 2013 | 9 | 2013 |
