| High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation E Breeze, E Harrison, S McHattie, L Hughes, R Hickman, C Hill, S Kiddle, ... The Plant Cell 23 (3), 873-894, 2011 | 963 | 2011 |
| Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ... The Plant Cell 24 (9), 3530-3557, 2012 | 392 | 2012 |
| A local regulatory network around three NAC transcription factors in stress responses and senescence in A rabidopsis leaves R Hickman, C Hill, CA Penfold, E Breeze, L Bowden, JD Moore, P Zhang, ... The Plant Journal 75 (1), 26-39, 2013 | 215 | 2013 |
| How to infer gene networks from expression profiles, revisited CA Penfold, DL Wild Interface focus 1 (6), 857-870, 2011 | 214 | 2011 |
| Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv … LA Lewis, K Polanski, M de Torres-Zabala, S Jayaraman, L Bowden, ... The Plant Cell 27 (11), 3038-3064, 2015 | 180 | 2015 |
| Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis U Bechtold, CA Penfold, DJ Jenkins, R Legaie, JD Moore, T Lawson, ... The Plant Cell 28 (2), 345-366, 2016 | 126 | 2016 |
| Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition Y Huang, JK Kim, DV Do, C Lee, CA Penfold, JJ Zylicz, JC Marioni, ... Elife 6, e22345, 2017 | 101 | 2017 |
| Spatial profiling of early primate gastrulation in utero S Bergmann, CA Penfold, E Slatery, D Siriwardena, C Drummer, S Clark, ... Nature 609 (7925), 136-143, 2022 | 86 | 2022 |
| Modelling transcriptional networks in leaf senescence CA Penfold, V Buchanan-Wollaston Journal of experimental botany 65 (14), 3859-3873, 2014 | 70 | 2014 |
| Tracing the emergence of primordial germ cells from bilaminar disc rabbit embryos and pluripotent stem cells T Kobayashi, A Castillo-Venzor, CA Penfold, M Morgan, N Mizuno, ... Cell reports 37 (2), 2021 | 55 | 2021 |
| Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks CA Penfold, V Buchanan-Wollaston, KJ Denby, DL Wild Bioinformatics 28 (12), i233-i241, 2012 | 55 | 2012 |
| Sequential enhancer state remodelling defines human germline competence and specification WWC Tang, A Castillo-Venzor, WH Gruhn, T Kobayashi, CA Penfold, ... Nature cell biology 24 (4), 448-460, 2022 | 43 | 2022 |
| Network modeling to understand plant immunity O Windram, CA Penfold, KJ Denby Annual review of phytopathology 52 (1), 93-111, 2014 | 41 | 2014 |
| Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence J Kim, SJ Park, IH Lee, H Chu, CA Penfold, JH Kim, ... Journal of Experimental Botany 69 (12), 3023-3036, 2018 | 38 | 2018 |
| A hexa-species transcriptome atlas of mammalian embryogenesis delineates metabolic regulation across three different implantation modes A Malkowska, C Penfold, S Bergmann, TE Boroviak Nature communications 13 (1), 3407, 2022 | 30 | 2022 |
| Time‐series transcriptomics reveals a BBX32‐directed control of acclimation to high light in mature Arabidopsis leaves R Alvarez‐Fernandez, CA Penfold, G Galvez‐Valdivieso, ... The Plant Journal 107 (5), 1363-1386, 2021 | 29* | 2021 |
| CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data C Penfold, A Shifaz, P Brown, A Nicholson, D Wild Statistical Applications in Genetics and Molecular Biology 14 (3), 307, 2015 | 28 | 2015 |
| An integrated atlas of human placental development delineates essential regulators of trophoblast stem cells Y Chen, D Siriwardena, C Penfold, A Pavlinek, TE Boroviak Development 149 (13), dev200171, 2022 | 27 | 2022 |
| Inferring the perturbation time from biological time course data J Yang, CA Penfold, MR Grant, M Rattray Bioinformatics 32 (19), 2956-2964, 2016 | 27 | 2016 |
| Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition CA Penfold, PE Brown, ND Lawrence, ASH Goldman PLoS computational biology 8 (5), e1002496, 2012 | 27 | 2012 |
Katherine DenbyUniversity of YorkVerified email at york.ac.uk