| GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes JJ Jin, WB Yu, JB Yang, Y Song, CW DePamphilis, TS Yi, DZ Li Genome biology 21, 1-31, 2020 | 2731* | 2020 |
| PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes XJ Qu, MJ Moore, DZ Li, TS Yi Plant Methods 15, 1-12, 2019 | 842 | 2019 |
| Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants China Plant BOL Group 1, DZ Li, LM Gao, HT Li, H Wang, XJ Ge, JQ Liu, ... Proceedings of the National Academy of Sciences 108 (49), 19641-19646, 2011 | 799 | 2011 |
| Origin of angiosperms and the puzzle of the Jurassic gap HT Li, TS Yi, LM Gao, PF Ma, T Zhang, JB Yang, MA Gitzendanner, ... Nature plants 5 (5), 461-470, 2019 | 634 | 2019 |
| A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny: The Legume Phylogeny Working Group (LPWG) N Azani, M Babineau, CD Bailey, H Banks, AR Barbosa, RB Pinto, ... taxon 66 (1), 44-77, 2017 | 443 | 2017 |
| Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication Y Xiang, CH Huang, Y Hu, J Wen, S Li, T Yi, H Chen, J Xiang, H Ma Molecular biology and evolution 34 (2), 262-281, 2017 | 380 | 2017 |
| Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics SD Zhang, JJ Jin, SY Chen, MW Chase, DE Soltis, HT Li, JB Yang, DZ Li, ... New Phytologist 214 (3), 1355-1367, 2017 | 356 | 2017 |
| Representation of dormant and active microbial dynamics for ecosystem modeling G Wang, MA Mayes, L Gu, CW Schadt PloS one 9 (2), e89252, 2014 | 323* | 2014 |
| Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae R Zhang, YH Wang, JJ Jin, GW Stull, A Bruneau, D Cardoso, ... Systematic Biology 69 (4), 613-622, 2020 | 179 | 2020 |
| Plastid phylogenomic insights into relationships of all flowering plant families HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai, MA Gitzendanner, ... BMC biology 19, 1-13, 2021 | 173 | 2021 |
| Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu, T Zhang, AN Egan, ... Molecular plant 14 (5), 748-773, 2021 | 172 | 2021 |
| Plastid phylogenomic insights into the evolution of Caryophyllales G Yao, JJ Jin, HT Li, JB Yang, VS Mandala, M Croley, R Mostow, ... Molecular Phylogenetics and Evolution 134, 74-86, 2019 | 141 | 2019 |
| Molecular phylogeny of the nettle family (Urticaceae) inferred from multiple loci of three genomes and extensive generic sampling ZY Wu, AK Monro, RI Milne, H Wang, TS Yi, J Liu, DZ Li Molecular phylogenetics and evolution 69 (3), 814-827, 2013 | 140 | 2013 |
| Global legume diversity assessment: concepts, key indicators, and strategies T Yahara, F Javadi, Y Onoda, LP de Queiroz, DP Faith, DE Prado, ... Taxon 62 (2), 249-266, 2013 | 140 | 2013 |
| Molecular phylogenetics and character evolution of Cannabaceae MQ Yang, R van Velzen, FT Bakker, A Sattarian, DZ Li, TS Yi Taxon 62 (3), 473-485, 2013 | 139 | 2013 |
| Multi-gene analysis provides a well-supported phylogeny of Rosales S Zhang, DE Soltis, Y Yang, D Li, T Yi Molecular Phylogenetics and Evolution 60 (1), 21-28, 2011 | 127 | 2011 |
| Phylogenetics and reticulate evolution in Pistacia (Anacardiaceae) T Yi, J Wen, A Golan‐Goldhirsh, DE Parfitt American Journal of Botany 95 (2), 241-251, 2008 | 117 | 2008 |
| Phylogenetic inferences in Prunus (Rosaceae) using chloroplast ndhF and nuclear ribosomal ITS sequences WEN Jun, ST Berggren, S ICKERT-BOND, YI Ting-Shuang, YOO Ki-Oug, ... Journal of systematics and evolution 46 (3), 322, 2008 | 114 | 2008 |
| Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms WG Stull, XJ Qu, C Parins-Fukuchi, YY Yang, JB Yang, ZY Yang, Y Hu, ... Nature Plants 7, 1015–1025, 2021 | 113 | 2021 |
| Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere T Yi, AJ Miller, J Wen Molecular phylogenetics and evolution 33 (3), 861-879, 2004 | 110 | 2004 |
