| Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis A Viehweger, S Krautwurst, K Lamkiewicz, R Madhugiri, J Ziebuhr, ... Genome research 29 (9), 1545-1554, 2019 | 256 | 2019 |
| poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing C Brandt, S Krautwurst, R Spott, M Lohde, M Jundzill, M Marquet, ... Frontiers in Genetics 12, 711437, 2021 | 39 | 2021 |
| Distributed representations of protein domains and genomes and their compositionality A Viehweger, S Krautwurst, B König, M Marz bioRxiv, 524280, 2019 | 15* | 2019 |
| Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing A Erkes, RP Grove, M Žarković, S Krautwurst, R Koebnik, RD Morgan, ... BMC genomics 24 (1), 151, 2023 | 10 | 2023 |
| Small RNAs direct attack and defense mechanisms in a quorum sensing phage and its host M Sprenger, M Siemers, S Krautwurst, K Papenfort Cell Host & Microbe 32 (5), 727-738. e6, 2024 | 6 | 2024 |
| A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes NF Mostajo, M Lataretu, S Krautwurst, F Mock, D Desirò, K Lamkiewicz, ... NAR genomics and bioinformatics 2 (1), lqz006, 2020 | 6* | 2020 |
| Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon V Fuesslin, S Krautwurst, A Srivastava, D Winter, B Liedigk, T Thye, ... Frontiers in Microbiology 13, 909692, 2022 | 3 | 2022 |
| Targeted decontamination of sequencing data with CLEAN M Lataretu, S Krautwurst, MR Huska, M Marquet, A Viehweger, SD Braun, ... bioRxiv, 2023.08. 05.552089, 2023 | 2 | 2023 |
| Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain NH Kumar, V Kluever, E Barth, S Krautwurst, M Furlan, M Pelizzola, ... Nucleic Acids Research 52 (6), 2865-2885, 2024 | 1 | 2024 |
| Streptomyces marispadix sp. nov., isolated from marine beach sediment JDN Santos, IR Vitorino, N Kallscheuer, A Srivastava, S Krautwurst, ... International Journal of Systematic and Evolutionary Microbiology 73 (7), 005956, 2023 | 1 | 2023 |
| Direct RNA Sequencing for Complete Viral Genomes S Krautwurst, R Dijkman, V Thiel, A Krumbholz, M Marz Virus Bioinformatics, 35-50, 2021 | 1 | 2021 |
| Nanopore sequencing enables novel detection of deuterium incorporation in DNA CH zu Siederdissen, J Spangenberg, K Bisdorf, S Krautwurst, ... Computational and Structural Biotechnology Journal 23, 3584-3594, 2024 | | 2024 |
| Analysis of Non-Coding RNAs in Placental Tissue and Extracellular Vesicles: Implications for Trophoblast Function J Henao-Restrepo, A Schneider, S Krautwurst, C Diezel, M Zarkovic, ... Placenta 154, e57-e58, 2024 | | 2024 |
| Phage-phage competition and biofilms reduce the efficacy of a combination of two virulent bacteriophages against Pseudomonas aeruginosa M Buerkle, IHE Korf, A Lippegaus, S Krautwurst, C Rohde, C Weissfuss, ... bioRxiv, 2024.09. 13.612609, 2024 | | 2024 |
| Maximizing the potential of genomic and transcriptomic studies by nanopore sequencing D Meyer, W Göttsch, J Spannenberg, P Bohn, B Stieber, S Krautwurst, ... bioRxiv, 2023.12. 06.570356, 2023 | | 2023 |
| SURVEY AND SUMMARY Maximizing the potential of genomic and transcriptomic studies by nanopore sequencing D Meyer, W Gottsch, J Spannenberg, P Bohn, B Stieber, S Krautwurst, ... | | |
Manja MarzRNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena.Verified email at uni-jena.de