| The sequence alignment/map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... bioinformatics 25 (16), 2078-2079, 2009 | 56474 | 2009 |
| 1000 genome project data processing subgroup. The sequence alignment/map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... Bioinformatics 25 (16), 2078-2079, 2009 | 11493 | 2009 |
| Mapping short DNA sequencing reads and calling variants using mapping quality scores H Li, J Ruan, R Durbin Genome research 18 (11), 1851-1858, 2008 | 3559 | 2008 |
| De novo assembly of human genomes with massively parallel short read sequencing R Li, H Zhu, J Ruan, W Qian, X Fang, Z Shi, Y Li, S Li, G Shan, ... Genome research 20 (2), 265-272, 2010 | 3374 | 2010 |
| The genome of the cucumber, Cucumis sativus L. S Huang, R Li, Z Zhang, LI Li, X Gu, W Fan, WJ Lucas, X Wang, B Xie, ... Nature genetics 41 (12), 1275-1281, 2009 | 1717 | 2009 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 1550 | 2019 |
| The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010 | 1407 | 2010 |
| Genomic variation in 3,010 diverse accessions of Asian cultivated rice W Wang, R Mauleon, Z Hu, D Chebotarov, S Tai, Z Wu, M Li, T Zheng, ... Nature 557 (7703), 43-49, 2018 | 1366 | 2018 |
| Fast and accurate long-read assembly with wtdbg2 J Ruan, H Li Nature methods 17 (2), 155-158, 2020 | 1222 | 2020 |
| The diploid genome sequence of an Asian individual J Wang, W Wang, R Li, Y Li, G Tian, L Goodman, W Fan, J Zhang, J Li, ... Nature 456 (7218), 60-65, 2008 | 1164 | 2008 |
| A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms Genome sequence of red jungle fowl: Washington University School of Medicine ... Nature 432 (7018), 717-722, 2004 | 636 | 2004 |
| Subgroup 1000 Genome Project Data Processing. 2009. The Sequence Alignment/Map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... Bioinformatics 25 (16), 2078-2079, 2009 | 629 | 2009 |
| TreeFam: a curated database of phylogenetic trees of animal gene families H Li, A Coghlan, J Ruan, LJ Coin, JK Heriche, L Osmotherly, R Li, T Liu, ... Nucleic acids research 34 (suppl_1), D572-D580, 2006 | 618 | 2006 |
| TreeFam: 2008 update J Ruan, H Li, Z Chen, A Coghlan, LJM Coin, Y Guo, JK Heriche, Y Hu, ... Nucleic acids research 36 (suppl_1), D735-D740, 2007 | 386 | 2007 |
| DBG2OLC: efficient assembly of large genomes using long erroneous reads of the third generation sequencing technologies C Ye, CM Hill, S Wu, J Ruan, Z Ma Scientific reports 6 (1), 31900, 2016 | 368 | 2016 |
| Population sequencing enhances understanding of tea plant evolution X Wang, H Feng, Y Chang, C Ma, L Wang, X Hao, A Li, H Cheng, ... Nature communications 11 (1), 4447, 2020 | 214 | 2020 |
| SilkDB: a knowledgebase for silkworm biology and genomics J Wang, Q Xia, X He, M Dai, J Ruan, J Chen, G Yu, H Yuan, Y Hu, R Li, ... Nucleic acids research 33 (suppl_1), D399-D402, 2005 | 210 | 2005 |
| A super pan-genomic landscape of rice L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin, M Hu, F Zhao, ... Cell Research 32 (10), 878-896, 2022 | 205 | 2022 |
| SMARTdenovo: a de novo assembler using long noisy reads H Liu, S Wu, A Li, J Ruan Gigabyte 2021, 2021 | 184 | 2021 |
| A chromosome-scale genome assembly of cucumber (Cucumis sativus L.) Q Li, H Li, WU Huang, Y Xu, Q Zhou, S Wang, J Ruan, S Huang, Z Zhang GigaScience 8 (6), giz072, 2019 | 175 | 2019 |
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
