| YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ... Nucleic acids research 48 (D1), D642-D649, 2020 | 201 | 2020 |
| Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation AB Guerra, JS Oliveira, RCB Silva-Portela, W Araújo, AC Carlos, ... Environmental Pollution 235, 869-880, 2018 | 137 | 2018 |
| YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis MC Teixeira, R Viana, M Palma, J Oliveira, M Galocha, MN Mota, ... Nucleic Acids Research 51 (D1), D785-D791, 2023 | 50 | 2023 |
| BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies JS Oliveira, W Araujo, AI Lopes Sales, A Brito Guerra, SC Silva Araújo, ... Database 2015, bav033, 2015 | 47 | 2015 |
| Comparative metagenomics reveals different hydrocarbon degradative abilities from enriched oil-drilling waste AP Napp, JES Pereira, JS Oliveira, RCB Silva-Portela, LF Agnez-Lima, ... Chemosphere 209, 7-16, 2018 | 32 | 2018 |
| Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: Clues on host survival and probiotic activity based on promoter … P Pais, J Oliveira, V Almeida, M Yilmaz, PT Monteiro, MC Teixeira Genomics 113 (2), 530-539, 2021 | 22 | 2021 |
| Microbial culture in minimal medium with oil favors enrichment of biosurfactant producing genes WJ Araújo, JS Oliveira, SCS Araújo, CF Minnicelli, RCB Silva-Portela, ... Frontiers in Bioengineering and Biotechnology 8, 962, 2020 | 20 | 2020 |
| Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with … JS Oliveira, WJ Araújo, RM Figueiredo, RCB Silva-Portela, ... BMC microbiology 17, 1-10, 2017 | 20 | 2017 |
| The NC Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts CP Godinho, M Palma, J Oliveira, MN Mota, M Antunes, MC Teixeira, ... FEMS yeast research 21 (6), foab045, 2021 | 11 | 2021 |
| A computational approach for microRNA identification in plants: Combining genome-based predictions with RNA-seq data JS Oliveira, ND Mendes, V Carocha, C Graça, JA Paiva, AT Freitas Journal of Data Mining in Genomics & Proteomics 4 (130), 2153-0602.1000130, 2013 | 10 | 2013 |
| From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon J Oliveira, M Antunes, CP Godinho, MC Teixeira, I Sá-Correia, ... BMC bioinformatics 22 (1), 399, 2021 | 7 | 2021 |
| The Federated European Genome-phenome Archive as a global network for sharing human genomics data M Freeberg, T D'Altri, T Keane, J Rambla, A Curwin, AA Ayuso, ... | | 2024 |
| A research data management (RDM) community for ELIXIR F D'Anna, N Jareborg, M Jetten, M Ahokas, P Alper, R Andrews, K Bösl, ... F1000Research 13, ELIXIR-230, 2024 | | 2024 |
| A research data management (RDM) community for ELIXIR J Niclas, J Mijke, A Minna, A Pinar, R Andrews, B Korbinian, D Faria, ... F1000Research 13, 2024 | | 2024 |
| Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach P Pais, J Oliveira, R Viana, IV Costa, I Sá-Correia, PT Monteiro, ... Yeast Functional Genomics: Methods and Protocols, 419-437, 2022 | | 2022 |
| Making European performance and impact assessment frameworks glocal AM Melo, S Oliveira, JS Oliveira, CS Martin, RB Leite | | 2022 |
| Making European performance and impact assessment frameworks for research infrastructures glocal AMP Melo, S Oliveira, JS Oliveira, CS Martin, RB Leite F1000Research 11, 2022 | | 2022 |
| Prospecção de genes aplicados à biodegradação de hidrocarbonetos e produção de surfactantes utilizando abordagens computacionais JS Oliveira | | 2018 |
| A Virtual Research Environment for the Oil and Gas Domain JS Oliveira, J Borbinha, AT Freitas ERCIM NEWS, 16-17, 2017 | | 2017 |
| Identification of regulatory networks from predictions of miRNAs and their targets RM Figueiredo, JS Oliveira, ND Mendes, AT Freitas | | |