Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein, EN Farah, E Destici, ... Nature genetics 51 (9), 1380-1388, 2019 | 314 | 2019 |
Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant cancers TWR Kelso, DK Porter, ML Amaral, MN Shokhirev, C Benner, ... Elife 6, e30506, 2017 | 206 | 2017 |
Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain Y Zhang, ML Amaral, C Zhu, SF Grieco, X Hou, L Lin, J Buchanan, L Tong, ... Cell research 32 (11), 1008-1021, 2022 | 44 | 2022 |
BART: bioinformatics array research tool ML Amaral, GA Erikson, MN Shokhirev BMC bioinformatics 19, 1-6, 2018 | 39 | 2018 |
Single-cell analysis of chromatin accessibility in the adult mouse brain S Zu, YE Li, K Wang, EJ Armand, S Mamde, ML Amaral, Y Wang, A Chu, ... Nature 624 (7991), 378-389, 2023 | 34 | 2023 |
Dynamic enhancer landscapes in human craniofacial development SS Rajderkar, K Paraiso, ML Amaral, M Kosicki, LE Cook, F Darbellay, ... Nature communications 15 (1), 2030, 2024 | 6 | 2024 |
Cell Type-and Tissue-specific Enhancers in Craniofacial Development SS Rajderkar, K Paraiso, ML Amaral, M Kosicki, LE Cook, F Darbellay, ... BioRxiv, 2023 | 1 | 2023 |
Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant TWR Kelso, DK Porter, ML Amaral | | 2017 |