| Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram T Biancalani, G Scalia, L Buffoni, R Avasthi, Z Lu, A Sanger, N Tokcan, ... Nature methods 18 (11), 1352-1362, 2021 | 533 | 2021 |
| Gene expression cartography M Nitzan, N Karaiskos, N Friedman, N Rajewsky Nature 576 (7785), 132-137, 2019 | 278 | 2019 |
| Evidence for functional networks within the human brain's white matter M Peer, M Nitzan, AS Bick, N Levin, S Arzy Journal of Neuroscience 37 (27), 6394-6407, 2017 | 217 | 2017 |
| Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome AB Holmes, C Corinaldesi, Q Shen, R Kumar, N Compagno, Z Wang, ... Journal of Experimental Medicine 217 (10), e20200483, 2020 | 191 | 2020 |
| Integration of bacterial small RNAs in regulatory networks M Nitzan, R Rehani, H Margalit Annual review of biophysics 46 (1), 131-148, 2017 | 185 | 2017 |
| Model-free inference of direct network interactions from nonlinear collective dynamics J Casadiego, M Nitzan, S Hallerberg, M Timme Nature communications 8 (1), 2192, 2017 | 154 | 2017 |
| ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin R Sadeh, I Sharkia, G Fialkoff, A Rahat, J Gutin, A Chappleboim, M Nitzan, ... Nature biotechnology 39 (5), 586-598, 2021 | 131 | 2021 |
| NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport N Moriel, E Senel, N Friedman, N Rajewsky, N Karaiskos, M Nitzan Nature protocols 16 (9), 4177-4200, 2021 | 88 | 2021 |
| Revealing physical interaction networks from statistics of collective dynamics M Nitzan, J Casadiego, M Timme Science advances 3 (2), e1600396, 2017 | 87 | 2017 |
| Statistical optimal transport via factored couplings A Forrow, JC Hütter, M Nitzan, P Rigollet, G Schiebinger, J Weed The 22nd International Conference on Artificial Intelligence and Statistics …, 2019 | 83 | 2019 |
| Reversible functional connectivity disturbances during transient global amnesia M Peer, M Nitzan, I Goldberg, J Katz, JM Gomori, T Ben‐Hur, S Arzy Annals of neurology 75 (5), 634-643, 2014 | 69 | 2014 |
| Dynamics of the type III secretion system activity of enteropathogenic Escherichia coli E Mills, K Baruch, G Aviv, M Nitzan, I Rosenshine MBio 4 (4), 10.1128/mbio. 00303-13, 2013 | 66 | 2013 |
| Bundle-forming pilus retraction enhances enteropathogenic Escherichia coli infectivity EE Zahavi, JA Lieberman, MS Donnenberg, M Nitzan, K Baruch, ... Molecular biology of the cell 22 (14), 2436-2447, 2011 | 57 | 2011 |
| Interactions between distant ceRNAs in regulatory networks M Nitzan, A Steiman-Shimony, Y Altuvia, O Biham, H Margalit Biophysical Journal 106 (10), 2254-2266, 2014 | 53 | 2014 |
| Analytical results for the distribution of shortest path lengths in random networks E Katzav, M Nitzan, D ben-Avraham, PL Krapivsky, R Kühn, N Ross, ... Europhysics Letters 111 (2), 2015 | 50 | 2015 |
| Mapping cells through time and space with moscot D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander, ... Nature, 1-11, 2025 | 36 | 2025 |
| TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics S Mages, N Moriel, I Avraham-Davidi, E Murray, J Watter, F Chen, ... Nature biotechnology 41 (10), 1465-1473, 2023 | 36 | 2023 |
| Selective flexible packaging pathways of the segmented genome of influenza A virus I Haralampiev, S Prisner, M Nitzan, M Schade, F Jolmes, M Schreiber, ... Nature communications 11 (1), 4355, 2020 | 35 | 2020 |
| Distance distribution in configuration-model networks M Nitzan, E Katzav, R Kühn, O Biham Physical Review E 93 (6), 062309, 2016 | 32 | 2016 |
| Disentanglement of single-cell data with biolord Z Piran, N Cohen, Y Hoshen, M Nitzan Nature Biotechnology, 1-6, 2024 | 29 | 2024 |
Michael PeerUniversity of PennsylvaniaVerified email at sas.upenn.edu