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| Construction of a cross-species cell landscape at single-cell level R Wang, P Zhang, J Wang, L Ma, W E, S Suo, M Jiang, J Li, H Chen, ... Nucleic acids research 51 (2), 501-516, 2023 | 87 | 2023 |
| PlantCircNet: a database for plant circRNA–miRNA–mRNA regulatory networks P Zhang, X Meng, H Chen, Y Liu, J Xue, Y Zhou, M Chen Database 2017, bax089, 2017 | 74 | 2017 |
| DeepTrio: a ternary prediction system for protein–protein interaction using mask multiple parallel convolutional neural networks X Hu, C Feng, Y Zhou, A Harrison, M Chen Bioinformatics 38 (3), 694-702, 2022 | 51 | 2022 |
| scMCA: a tool to define mouse cell types based on single-cell digital expression H Sun, Y Zhou, L Fei, H Chen, G Guo Computational Methods for Single-Cell Data Analysis, 91-96, 2019 | 34 | 2019 |
| Cell landscape of larval and adult Xenopus laevis at single-cell resolution Y Liao, L Ma, Q Guo, W E, X Fang, L Yang, F Ruan, J Wang, P Zhang, ... nature communications 13 (1), 4306, 2022 | 29 | 2022 |
| PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants W Wu, Y Wu, D Hu, Y Zhou, Y Hu, Y Chen, M Chen Database 2020, baaa001, 2020 | 29 | 2020 |
| FPD: a comprehensive phosphorylation database in fungi Y Bai, B Chen, M Li, Y Zhou, S Ren, Q Xu, M Chen, S Wang Fungal biology 121 (10), 869-875, 2017 | 28 | 2017 |
| Dissecting LncRNA roles in renal cell carcinoma metastasis and characterizing genomic heterogeneity by single-cell RNA-seq X Li, X Meng, C Wei, Y Zhou, H Chen, H Huang, M Chen Molecular Cancer Research 16 (12), 1879-1888, 2018 | 27 | 2018 |
| miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining L Yu, C Shao, X Ye, Y Meng, Y Zhou, M Chen Scientific reports 6 (1), 18901, 2016 | 25 | 2016 |
| Bioinformatics resources facilitate understanding and harnessing clinical research of SARS-CoV-2 MA Ahsan, Y Liu, C Feng, Y Zhou, G Ma, Y Bai, M Chen Briefings in bioinformatics 22 (2), 714-725, 2021 | 22 | 2021 |
| Genome-wide analysis of long non-coding RNAs responsive to multiple nutrient stresses in Arabidopsis thaliana J Wang, Q Chen, W Wu, Y Chen, Y Zhou, G Guo, M Chen Functional & integrative genomics 21, 17-30, 2021 | 18 | 2021 |
| Exploring the mechanisms of genome-wide long-range interactions: interpreting chromosome organization J Wang, X Meng, H Chen, C Yuan, X Li, Y Zhou, M Chen Briefings in functional genomics 15 (5), 385-395, 2016 | 16 | 2016 |
| Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single-cell resolution F Ye, G Zhang, W E, H Chen, C Yu, L Yang, Y Fu, J Li, S Fu, Z Sun, L Fei, ... Nature Communications 13 (1), 4228, 2022 | 14 | 2022 |
| Genome-wide analysis of the distinct types of chromatin interactions in Arabidopsis thaliana J Wang, Y Zhou, X Li, X Meng, M Fan, H Chen, J Xue, M Chen Plant and Cell Physiology 58 (1), 57-70, 2017 | 9 | 2017 |
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