| VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016 | 8779 | 2016 |
| PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014 | 4429 | 2014 |
| RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019 | 3224 | 2019 |
| Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014 | 2720 | 2014 |
| ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020 | 1587 | 2020 |
| VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 1143 | 2016 |
| Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017 | 877 | 2017 |
| EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019 | 563 | 2019 |
| Species tree inference with BPP using genomic sequences and the multispecies coalescent T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 35 (10), 2585-2593, 2018 | 369 | 2018 |
| VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 302 | 2016 |
| MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18, 1-11, 2018 | 189 | 2018 |
| The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015 | 187 | 2015 |
| A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 37 (4), 1211-1223, 2020 | 143 | 2020 |
| Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution" KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ... Science 349 (6247), 487, 2015 | 101 | 2015 |
| An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola) A Vasilikopoulos, B Misof, K Meusemann, D Lieberz, T Flouri, RG Beutel, ... BMC Evolutionary Biology 20, 1-24, 2020 | 100 | 2020 |
| Species delimitation B Rannala, Z Yang Self published, 2020 | 100 | 2020 |
| VSEARCH: A versatile open source tool for metagenomics. PeerJ 2016: 1–22 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 67 | 2016 |
| Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments AGP Ford, TR Bullen, L Pang, MJ Genner, R Bills, T Flouri, BP Ngatunga, ... Molecular Phylogenetics and Evolution 136, 215-226, 2019 | 53 | 2019 |
| Systematic errors in phylogenetic trees P Kapli, T Flouri, MJ Telford Current Biology 31 (2), R59-R64, 2021 | 50 | 2021 |
| Longest common substrings with k mismatches T Flouri, E Giaquinta, K Kobert, E Ukkonen Information Processing Letters 115 (6-8), 643-647, 2015 | 50 | 2015 |
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr