| Spatial transcriptomics and in situ sequencing to study Alzheimer’s disease WT Chen, A Lu, K Craessaerts, B Pavie, CS Frigerio, N Corthout, X Qian, ... Cell 182 (4), 976-991. e19, 2020 | 726 | 2020 |
| A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart M Asp, S Giacomello, L Larsson, C Wu, D Fürth, X Qian, E Wärdell, ... Cell 179 (7), 1647-1660. e19, 2019 | 669 | 2019 |
| Spatiotemporal structure of cell fate decisions in murine neural crest R Soldatov, M Kaucka, ME Kastriti, J Petersen, T Chontorotzea, ... Science 364 (6444), eaas9536, 2019 | 462 | 2019 |
| Profiling surface proteins on individual exosomes using a proximity barcoding assay D Wu, J Yan, X Shen, Y Sun, M Thulin, Y Cai, L Wik, Q Shen, J Oelrich, ... Nature communications 10 (1), 3854, 2019 | 248 | 2019 |
| Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue D Gyllborg, CM Langseth, X Qian, E Choi, SM Salas, MM Hilscher, ... Nucleic acids research 48 (19), e112-e112, 2020 | 234 | 2020 |
| Probabilistic cell typing enables fine mapping of closely related cell types in situ X Qian, KD Harris, T Hauling, D Nicoloutsopoulos, AB Muñoz-Manchado, ... Nature methods 17 (1), 101-106, 2020 | 223 | 2020 |
| Spatial and temporal localization of immune transcripts defines hallmarks and diversity in the tuberculosis granuloma B Carow, T Hauling, X Qian, I Kramnik, M Nilsson, ME Rottenberg Nature communications 10 (1), 1823, 2019 | 97 | 2019 |
| Oligonucleotide gap-fill ligation for mutation detection and sequencing in situ M Mignardi, A Mezger, X Qian, L La Fleur, J Botling, C Larsson, M Nilsson Nucleic Acids Research 43 (22), e151-e151, 2015 | 81 | 2015 |
| Analysis of IAV replication and co-infection dynamics by a versatile RNA viral genome labeling method D Dou, I Hernández-Neuta, H Wang, H Östbye, X Qian, S Thiele, ... Cell reports 20 (1), 251-263, 2017 | 72 | 2017 |
| SCRINSHOT enables spatial mapping of cell states in tissue sections with single-cell resolution A Sountoulidis, A Liontos, HP Nguyen, AB Firsova, A Fysikopoulos, ... PLoS biology 18 (11), e3000675, 2020 | 62 | 2020 |
| Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio CM Clausson, L Arngården, O Ishaq, A Klaesson, M Kühnemund, ... Scientific reports 5 (1), 12317, 2015 | 60 | 2015 |
| Modulation of Central Carbon Metabolism by Acetylation of Isocitrate Lyase in Mycobacterium tuberculosis J Bi, Y Wang, H Yu, X Qian, H Wang, J Liu, X Zhang Scientific reports 7 (1), 44826, 2017 | 49 | 2017 |
| Generation of in situ sequencing based OncoMaps to spatially resolve gene expression profiles of diagnostic and prognostic markers in breast cancer J Svedlund, C Strell, X Qian, KJC Zilkens, NP Tobin, J Bergh, ... EBioMedicine 48, 212-223, 2019 | 32 | 2019 |
| Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development MM Johansson, E Lundin, X Qian, M Mirzazadeh, J Halvardson, E Darj, ... Biology of sex Differences 7, 1-17, 2016 | 32 | 2016 |
| Lalá ková, J., Kühnemund, M., Voytyuk, I., et al.(2020). Spatial transcriptomics and in situ sequencing to study alzheimer’s disease WT Chen, A Lu, K Craessaerts, B Pavie, C Sala Frigerio, N Corthout, ... Cell 182, 976-991, 0 | 24 | |
| Heat accumulation, microstructure evolution, and stress distribution of Ti–Al alloy manufactured by twin‐wire plasma arc additive X Hou, X Ye, X Qian, X Zhang, P Zhang, Q Lu, Z Yu, C Shen, L Wang, ... Advanced Engineering Materials 24 (5), 2101151, 2022 | 19 | 2022 |
| Formation of silver nanostructures by rolling circle amplification using boranephosphonate-modified nucleotides C Russell, S Roy, S Ganguly, X Qian, MH Caruthers, M Nilsson Analytical chemistry 87 (13), 6660-6666, 2015 | 18 | 2015 |
| Spatial and temporal transcriptomics reveal microglia-astroglia crosstalk in the amyloid-β plaque cell niche of Alzheimer’s disease WT Chen, A Lu, K Craessaerts, B Pavie, C Sala Frigerio, R Mancuso, ... BioRxiv, 719930, 2019 | 15 | 2019 |
| Network visualization and analysis of spatially aware gene expression data with InsituNet J Salamon, X Qian, M Nilsson, DJ Lynn Cell systems 6 (5), 626-630. e3, 2018 | 14 | 2018 |
| Bridging histology and bioinformatics—computational analysis of spatially resolved transcriptomics M Mignardi, O Ishaq, X Qian, C Wählby Proceedings of the IEEE 105 (3), 530-541, 2016 | 14 | 2016 |