Adam Siepel

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Melissa HubiszCornell UniversityVerified email at cornell.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Charles G. DankoAssociate Professor, Cornell UniversityVerified email at cornell.edu
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
Kate RosenbloomUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Ilan GronauHrezliya Interdisciplinary Center (IDC), Herzliya, IsraelVerified email at idc.ac.il
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
John T. LisProfessor of Molecular Biology & Genetics, Cornell UniversityVerified email at cornell.edu
Brad GulkoPost doctoral researcher, Cold Spring Harbor LabVerified email at cshl.edu
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserVerified email at soe.ucsc.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
W. Lee KrausUniversity of Texas Southwestern Medical CenterVerified email at utsouthwestern.edu
Yifei (Yi-Fei) HuangPennsylvania State UniversityVerified email at psu.edu
Leighton CoreUniversity of ConnecticutVerified email at uconn.edu
Eric C. LaiMember, Sloan-Kettering InstituteVerified email at mskcc.org
Sofie SalamaProfessor of MCD Bio; Faculty Dir. of Diversity UCSC Genomics Inst.Verified email at ucsc.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
Angie S. HinrichsUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Hiram ClawsonUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at ucsc.edu
Noah DuklerIlluminaVerified email at cshl.edu

Adam Siepel

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory

Verified email at cshl.edu - Homepage

genomics molecular evolution computational biology gene regulation population genetics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6133	2007
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, ... Genome research 15 (8), 1034-1050, 2005	4961	2005
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004	2965	2004
Detection of nonneutral substitution rates on mammalian phylogenies KS Pollard, MJ Hubisz, KR Rosenbloom, A Siepel Genome research 20 (1), 110-121, 2010	2845	2010
The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006	1560	2006
Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... science 316 (5822), 222-234, 2007	1527	2007
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1305	2011
An RNA gene expressed during cortical development evolved rapidly in humans KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ... Nature 443 (7108), 167-172, 2006	1195	2006
Phylogenetic hidden Markov models R Nielsen, A Siepel, D Haussler Statistical methods in molecular evolution, 325-351, 2005	815*	2005
Comparative analyses of multi-species sequences from targeted genomic regions JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ... Nature 424 (6950), 788-793, 2003	791	2003
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis Nature genetics 46 (12), 1311-1320, 2014	737	2014
Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011	731	2011
Genome sequencing highlights the dynamic early history of dogs AH Freedman, I Gronau, RM Schweizer, D Ortega-Del Vecchyo, E Han, ... PLoS genetics 10 (1), e1004016, 2014	727	2014
Bayesian inference of ancient human demography from individual genome sequences I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel Nature genetics 43 (10), 1031-1034, 2011	693	2011
Identification and classification of conserved RNA secondary structures in the human genome JS Pedersen, G Bejerano, A Siepel, K Rosenbloom, K Lindblad-Toh, ... PLoS computational biology 2 (4), e33, 2006	673	2006
Patterns of positive selection in six mammalian genomes C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ... PLoS genetics 4 (8), e1000144, 2008	638	2008
Forces shaping the fastest evolving regions in the human genome KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ... PLoS genetics 2 (10), e168, 2006	591	2006
A distal enhancer and an ultraconserved exon are derived from a novel retroposon G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ... Nature 441 (7089), 87-90, 2006	587	2006
Ancient gene flow from early modern humans into Eastern Neanderthals M Kuhlwilm, I Gronau, MJ Hubisz, C De Filippo, J Prado-Martinez, ... Nature 530 (7591), 429-433, 2016	575	2016
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus Cell 145 (4), 622-634, 2011	563	2011

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