| Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium RA González-Pech, TG Stephens, Y Chen, AR Mohamed, Y Cheng, ... BMC biology 19 (1), 1-22, 2021 | 92 | 2021 |
| Microalgal nanocellulose–opportunities for a circular bioeconomy IL Ross, S Shah, B Hankamer, N Amiralian Trends in Plant Science 26 (9), 924-939, 2021 | 47 | 2021 |
| Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex S Shah, Y Chen, D Bhattacharya, CX Chan Scientific reports 10 (1), 1-12, 2020 | 25 | 2020 |
| Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes Y Chen, S Shah, KE Dougan, MJH van Oppen, D Bhattacharya, CX Chan Microorganisms 10 (8), 1662, 2022 | 22 | 2022 |
| Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts KE Dougan, RA González-Pech, TG Stephens, S Shah, Y Chen, ... Trends in Microbiology 30 (9), 831-840, 2022 | 21 | 2022 |
| Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions R Lo, KE Dougan, Y Chen, S Shah, D Bhattacharya, CX Chan Frontiers in Plant Science 13, 1233, 2022 | 21 | 2022 |
| Whole-genome duplication in an algal symbiont serendipitously confers thermal tolerance to corals KE Dougan, AJ Bellantuono, T Kahlke, RM Abbriano, Y Chen, S Shah, ... | 21 | 2022 |
| Alignment-free analysis of whole-genome sequences from Symbiodiniaceae reveals different phylogenetic signals in distinct regions R Lo, KE Dougan, Y Chen, S Shah, D Bhattacharya, CX Chan Frontiers in Plant Science 13, 815714, 2022 | 19 | 2022 |
| Multi-omics analysis reveals the molecular response to heat stress in a “red tide” dinoflagellate KE Dougan, ZL Deng, L Wöhlbrand, C Reuse, B Bunk, Y Chen, J Hartlich, ... Genome biology 24 (1), 265, 2023 | 18 | 2023 |
| Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons AS Jacob, LOB Andersen, PP Bitar, VP Richards, S Shah, MJ Stanhope, ... Genome biology and evolution 8 (11), 3340-3350, 2016 | 11 | 2016 |
| Whole-genome duplication in an algal symbiont bolsters coral heat tolerance KE Dougan, AJ Bellantuono, T Kahlke, RM Abbriano, Y Chen, S Shah, ... Science Advances 10 (29), eadn2218, 2024 | 8 | 2024 |
| Massive genome reduction occurred prior to the origin of coral algal symbionts S Shah, KE Dougan, Y Chen, R Lo, G Laird, MDA Fortuin, SK Rai, ... bioRxiv, 2023.03. 24.534093, 2023 | 7 | 2023 |
| Gene duplication is the primary driver of intraspecific genomic divergence in coral algal symbionts S Shah, KE Dougan, Y Chen, D Bhattacharya, CX Chan Open Biology 13 (9), 230182, 2023 | 6 | 2023 |
| Genome-Guided Analysis of Seven Weed Species Reveals Conserved Sequence and Structural Features of Key Gene Targets for Herbicide Development S Shah, T Lonhienne, CE Murray, Y Chen, KE Dougan, YS Low, ... Frontiers in Plant Science 13, 2022 | 5 | 2022 |
| Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates S Shah, KE Dougan, Y Chen, R Lo, G Laird, MDA Fortuin, SK Rai, ... The ISME Journal 18 (1), wrae059, 2024 | 3 | 2024 |
| Genome and transcriptome data for bloom-forming dinoflagellate Prorocentrum cordatum CCMP1329 KE Dougan, ZL Deng, L Wöhlbrand, C Reuse, B Bunk, Y Chen, J Hartlich, ... The University of Queensland, 2023 | 1 | 2023 |
| Effrenium voratum genomes and genes S Shah, CX Chan The University of Queensland, 2023 | 1 | 2023 |
| Genome data for Durusdinium trenchii CCMP2556 and SCF082 KE Dougan, AJ Bellantuono, T Kahlke, RM Abbriano, Y Chen, S Shah, ... The University of Queensland, 2022 | 1 | 2022 |
| Coral Conservation from the Genomic Perspective on Symbiodiniaceae Diversity and Function in the Holobiont S Shah, KE Dougan, D Bhattacharya, CX Chan Coral Reef Conservation and Restoration in the Omics Age, 85-96, 2022 | 1 | 2022 |
| Evolution and adaptation of non-symbiotic Symbiodiniaceae S Shah | | 2023 |