| Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018 | 853 | 2018 |
| A single-cell atlas of in vivo mammalian chromatin accessibility DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324. e18, 2018 | 753 | 2018 |
| Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018 | 689 | 2018 |
| The cis-regulatory dynamics of embryonic development at single-cell resolution DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ... Nature 555 (7697), 538-542, 2018 | 364 | 2018 |
| Metabolic and transcriptional reprogramming in developing soybean (Glycine max) embryos E Collakova, D Aghamirzaie, Y Fang, C Klumas, F Tabataba, ... Metabolites 3 (2), 347-372, 2013 | 80 | 2013 |
| Potential targets of VIVIPAROUS1/ABI3‐LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos A Schneider, D Aghamirzaie, H Elmarakeby, AN Poudel, AJ Koo, ... The Plant Journal 85 (2), 305-319, 2016 | 65 | 2016 |
| A machine learning approach to predict gene regulatory networks in seed development in Arabidopsis Y Ni, D Aghamirzaie, H Elmarakeby, E Collakova, S Li, R Grene, ... Frontiers in plant science 7, 1936, 2016 | 64 | 2016 |
| Changes in RNA splicing in developing soybean (Glycine max) embryos D Aghamirzaie, M Nabiyouni, Y Fang, C Klumas, LS Heath, R Grene, ... Biology 2 (4), 1311-1337, 2013 | 34 | 2013 |
| Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos. D Aghamirzaie, D Batra, LS Heath, A Schneider, R Grene, E Collakova BMC Genomics, 2015 | 23 | 2015 |
| CoSpliceNet: a framework for co-splicing network inference from transcriptomics data D Aghamirzaie, E Collakova, S Li, R Grene BMC Genomics, 2016 | 18 | 2016 |
| Expresso: a database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data D Aghamirzaie, KR Velmurugan, S Wu, D Altarawy, LS Heath, R Grene F1000Research 6, 2017 | 16 | 2017 |
| A highly parallel multi-class pattern classification on gpu M Nabiyouni, D Aghamirzaie 2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2012 | 11 | 2012 |
| Reduction of process variation effect on FPGAs using multiple configurations D Aghamirzaie, SA Razavi, MS Zamani, M Nabiyouni 2010 18th IEEE/IFIP International Conference on VLSI and System-on-Chip, 85-90, 2010 | 3 | 2010 |
| Induction of GLUTAMINE DUMPER1 reveals a link between amino acid export, abscisic acid, and immune responses S Yu, D Aghamirzaie, K Harich, E Collakova, R Grene, G Pilot bioRxiv, 2020.09. 23.310615, 2020 | 1 | 2020 |
| Reviewers for Bioinformatics and Biology Insights: 2018 AK Shasany, A Ten Have, A Onan, S Beier, D Cheek, D Aghamirzaie, ... Bioinformatics and Biology Insights 13, 1, 2019 | | 2019 |
| Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data F1000 6 (372), 2017 | | 2017 |
| Isoform-Specific Expression During Embryo Development in Arabidopsis and Soybean D Aghamirzaie Virginia Tech, 2016 | | 2016 |
| Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos R Grene, LS Heath, E Myers, F Tabataba, A Kakumanu, C Klumas, ... | | 2013 |
| Changes in RNA Splicing in Soybean Seed Embryos D Aghamirzaie, L Heath, R Grene, E Collakova | | |
Darren CusanovichUniversity of ArizonaVerified email at email.arizona.edu