| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 430 | 2014 |
| Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification HH He, CA Meyer, SS Hu, MW Chen, C Zang, Y Liu, PK Rao, T Fei, H Xu, ... Nature methods 11 (1), 73-78, 2014 | 278 | 2014 |
| Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk AW Turner, SS Hu, JV Mosquera, WF Ma, CJ Hodonsky, D Wong, ... Nature genetics 54 (6), 804-816, 2022 | 87 | 2022 |
| Ectopic Tcf1 expression instills a stem-like program in exhausted CD8+ T cells to enhance viral and tumor immunity Q Shan, S Hu, X Chen, DB Danahy, VP Badovinac, C Zang, HH Xue Cellular & molecular immunology 18 (5), 1262-1277, 2021 | 70 | 2021 |
| CRISPR-DO for genome-wide CRISPR design and optimization J Ma, J Köster, Q Qin, S Hu, W Li, C Chen, Q Cao, J Wang, S Mei, Q Liu, ... Bioinformatics 32 (21), 3336-3338, 2016 | 67 | 2016 |
| Inherited DNA methylation primes the establishment of accessible chromatin during genome activation G Liu, W Wang, S Hu, X Wang, Y Zhang Genome Research 28 (7), 998-1007, 2018 | 65 | 2018 |
| High-dimensional genomic data bias correction and data integration using MANCIE C Zang, T Wang, K Deng, B Li, S Hu, Q Qin, T Xiao, S Zhang, CA Meyer, ... Nature communications 7 (1), 11305, 2016 | 45 | 2016 |
| Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes DP Baquero, V Cvirkaite-Krupovic, SS Hu, JL Fields, X Liu, C Rensing, ... Cell 186 (13), 2853-2864. e8, 2023 | 42 | 2023 |
| Integrative analysis reveals the transcriptional collaboration between EZH2 and E2F1 in the regulation of cancer-related gene expression H Xu, K Xu, HH He, C Zang, CH Chen, Y Chen, Q Qin, S Wang, C Wang, ... Molecular Cancer Research 14 (2), 163-172, 2016 | 41 | 2016 |
| CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human B Qin, M Zhou, Y Ge, L Taing, T Liu, Q Wang, S Wang, J Chen, L Shen, ... Bioinformatics 28 (10), 1411-1412, 2012 | 40 | 2012 |
| Tcf1 preprograms the mobilization of glycolysis in central memory CD8+ T cells during recall responses Q Shan, SS Hu, S Zhu, X Chen, VP Badovinac, W Peng, C Zang, HH Xue Nature immunology 23 (3), 386-398, 2022 | 39 | 2022 |
| Dr. seq2: a quality control and analysis pipeline for parallel single cell transcriptome and epigenome data C Zhao, S Hu, X Huo, Y Zhang PLoS One 12 (7), e0180583, 2017 | 33 | 2017 |
| Single-cell chromatin profiling of the primitive gut tube reveals regulatory dynamics underlying lineage fate decisions RJ Smith, H Zhang, SS Hu, T Yung, R Francis, L Lee, MW Onaitis, ... Nature Communications 13 (1), 2965, 2022 | 15 | 2022 |
| CAM: A quality control pipeline for MNase-seq data S Hu, X Chen, J Liao, Y Chen, C Zhao, Y Zhang PloS one 12 (8), e0182771, 2017 | 11 | 2017 |
| Single cell RNA sequencing unravels mechanisms underlying senescence-like phenotypes of alveolar macrophages Y Wu, SS Hu, R Zhang, NP Goplen, X Gao, H Narasimhan, A Shi, Y Chen, ... Iscience 26 (7), 2023 | 7 | 2023 |
| An aberrant immune–epithelial progenitor niche drives viral lung sequelae H Narasimhan, IS Cheon, W Qian, SS Hu, T Parimon, C Li, N Goplen, ... Nature 634 (8035), 961-969, 2024 | 6 | 2024 |
| Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA SS Hu, L Liu, Q Li, W Ma, MJ Guertin, CA Meyer, K Deng, T Zhang, ... Nature Communications 13 (1), 5533, 2022 | 6 | 2022 |
| ncHMR detector: a computational framework to systematically reveal non-classical functions of histone modification regulators S Hu, D Huo, Z Yu, Y Chen, J Liu, L Liu, X Wu, Y Zhang Genome biology 21, 1-16, 2020 | 6 | 2020 |
| Dr. seq: a quality control and analysis pipeline for droplet sequencing X Huo, S Hu, C Zhao, Y Zhang Bioinformatics 32 (14), 2221-2223, 2016 | 6 | 2016 |
| The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8+ T cell fates X Zhao, W Hu, SR Park, S Zhu, SS Hu, C Zang, W Peng, Q Shan, HH Xue Nature Immunology 25 (2), 294-306, 2024 | 1 | 2024 |
Chongzhi ZangAssociate Professor, University of VirginiaVerified email at virginia.edu