| Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ... Nature genetics 50 (2), 307-316, 2018 | 367 | 2018 |
| Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs JE Phelan, DM O’sullivan, D Machado, J Ramos, YEA Oppong, ... Genome medicine 11, 1-7, 2019 | 336 | 2019 |
| Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable … K Dheda, JD Limberis, E Pietersen, J Phelan, A Esmail, M Lesosky, ... The lancet Respiratory medicine 5 (4), 269-281, 2017 | 156 | 2017 |
| Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis N Andreu, J Phelan, PF de Sessions, JM Cliff, TG Clark, ML Hibberd Scientific reports 7 (1), 42225, 2017 | 151 | 2017 |
| Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies G Napier, S Campino, Y Merid, M Abebe, Y Woldeamanuel, A Aseffa, ... Genome medicine 12, 1-10, 2020 | 132 | 2020 |
| Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ... BMC medicine 14, 1-13, 2016 | 124 | 2016 |
| Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, ... Microbial genomics 6 (2), e000335, 2020 | 111 | 2020 |
| Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ... BMC genomics 17, 1-12, 2016 | 101 | 2016 |
| PrimedRPA: primer design for recombinase polymerase amplification assays M Higgins, M Ravenhall, D Ward, J Phelan, A Ibrahim, MS Forrest, ... Bioinformatics 35 (4), 682-684, 2019 | 93 | 2019 |
| Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data B Sobkowiak, JR Glynn, RMGJ Houben, K Mallard, JE Phelan, ... BMC genomics 19, 1-15, 2018 | 83 | 2018 |
| Understanding molecular consequences of putative drug resistant mutations in Mycobacterium tuberculosis S Portelli, JE Phelan, DB Ascher, TG Clark, N Furnham Scientific reports 8 (1), 15356, 2018 | 81 | 2018 |
| Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. Genome Med 11: 41 JE Phelan, DM O’sullivan, D Machado, J Ramos, YEA Oppong, ... DOI: https://doi. org/10.1186/s13073-019-0650-x. PMID: https://www. ncbi …, 2019 | 75 | 2019 |
| Machine Learning Predicts Accurately Mycobacterium tuberculosis Drug Resistance From Whole Genome Sequencing Data W Deelder, S Christakoudi, J Phelan, ED Benavente, S Campino, ... Frontiers in genetics 10, 922, 2019 | 74 | 2019 |
| Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil MC Campos, JG Dombrowski, J Phelan, CRF Marinho, M Hibberd, ... PLoS One 13 (8), e0201452, 2018 | 72 | 2018 |
| A novel multiplex qPCR assay for detection of Plasmodium falciparum with histidine-rich protein 2 and 3 (pfhrp2 and pfhrp3) deletions in polyclonal infections L Grignard, D Nolder, N Sepúlveda, A Berhane, S Mihreteab, R Kaaya, ... EBioMedicine 55, 2020 | 67 | 2020 |
| Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole MC Campos, J Phelan, AF Francisco, MC Taylor, MD Lewis, A Pain, ... Scientific reports 7 (1), 14407, 2017 | 63 | 2017 |
| The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs J Phelan, DM O’Sullivan, D Machado, J Ramos, AS Whale, J O’Grady, ... Genome medicine 8, 1-9, 2016 | 62 | 2016 |
| Genetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid PJ Gómez-González, J Perdigao, P Gomes, ZM Puyen, D Santos-Lazaro, ... Scientific reports 11 (1), 19431, 2021 | 58 | 2021 |
| Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates P Palittapongarnpim, P Ajawatanawong, W Viratyosin, N Smittipat, ... Scientific reports 8 (1), 11597, 2018 | 57 | 2018 |
| Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis N Sepúlveda, J Phelan, E Diez-Benavente, S Campino, TG Clark, ... Infection, genetics and evolution 62, 211-219, 2018 | 57 | 2018 |