| DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome Y Ji, Z Zhou, H Liu, RV Davuluri Bioinformatics, 2021 | 777 | 2021 |
| Frizzled-7 identifies platinum-tolerant ovarian cancer cells susceptible to ferroptosis Y Wang, G Zhao, S Condello, H Huang, H Cardenas, EJ Tanner, JJ Wei, ... Cancer research 81 (2), 384-399, 2021 | 184 | 2021 |
| DNABERT-2: Efficient foundation model and benchmark for multi-species genome Z Zhou, Y Ji, W Li, P Dutta, R Davuluri, H Liu ICLR 2024, 2023 | 179 | 2023 |
| FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling H Huang, Y Wang, M Kandpal, G Zhao, H Cardenas, Y Ji, A Chaparala, ... Cancer research 80 (16), 3200-3214, 2020 | 171 | 2020 |
| IDH3α regulates one-carbon metabolism in glioblastoma JL May, FM Kouri, LA Hurley, J Liu, S Tommasini-Ghelfi, Y Ji, P Gao, ... Science advances 5 (1), eaat0456, 2019 | 74 | 2019 |
| DNABERT-2: efficient foundation model and benchmark for multi-species genome. arXiv; 2023 Z Zhou, Y Ji, W Li, P Dutta, R Davuluri, H Liu arXiv preprint arXiv:2306.15006, 0 | 20* | |
| Platform-independent classification system to predict molecular subtypes of high-grade serous ovarian carcinoma A Shilpi, M Kandpal, Y Ji, BL Seagle, S Shahabi, RV Davuluri JCO Clinical Cancer Informatics 3, 1-9, 2019 | 15 | 2019 |
| In silico analysis of alternative splicing on drug-target gene interactions Y Ji, RK Mishra, RV Davuluri Scientific Reports (Nature Publisher Group) 10 (1), 2020 | 14 | 2020 |
| Dnabert: pre-trained bidirectional encoder representations from transformers model for DNA-language in genome J Yanrong, Z Zhou, H Liu, RV Davuluri J. Bioinform. 37, 2112-20, 2021 | 9* | 2021 |
| Machine: the new art connoisseur Y Zhu, Y Ji, Y Zhang, L Xu, AL Zhou, E Chan arXiv preprint arXiv:1911.10091, 2019 | 7 | 2019 |
| DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome 2024 Z Zhou, Y Ji, W Li, P Dutta, R Davuluri, H Liu URL https://arxiv. org/abs/2306.15006, 0 | 6 | |
| A community effort to optimize sequence-based deep learning models of gene regulation AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ... Nature biotechnology, 1-11, 2024 | 5 | 2024 |
| Evaluation and optimization of sequence-based gene regulatory deep learning models AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ... bioRxiv, 2023.04. 26.538471, 2024 | 5 | 2024 |
| Onco-fetal protein Nogo-A restricts human and mouse glioma vascularization and growth via VEGF-Notch-hippo-metabolic signaling M Schwab, M Ghobrial, JJ Macias, M Beffinger, Y Ji, A Wacker, H Harada, ... bioRxiv, 2024.10. 02.616320, 2024 | 1 | 2024 |
| A new robust classifier to detect hot-spots and null-spots in protein–protein interface: validation of binding pocket and identification of inhibitors in in vitro and in vivo … Y Ji, X Tong, DD Xu, J Liao, RV Davuluri, GY Yang, RK Mishra Big Data Analytics in Chemoinformatics and Bioinformatics, 247-263, 2023 | 1 | 2023 |
| Stratified Subsampling Based p-values for Hypothesis Tests in Genomics Research S Pundir, Y Ji, A Shilpi, RV Davuluri Statistics and Applications 19 (1), 209-221, 2021 | 1 | 2021 |
| Real-world Application of Racial and Ethnic Imputation and Cohort Balancing Techniques to Deliver Equitable Clinical Trial Recruitment KJ Craig, YJ Ji, YC Zhang, A Berk, A Zaleski, O Abdelsamad, H Coetzer, ... AMIA Annual Symposium Proceedings 2023, 319, 2024 | | 2024 |
| Deep multi-omics integration by learning correlation-maximizing representation identifies prognostically stratified cancer subtypes Y Ji, P Dutta, R Davuluri Bioinformatics Advances 3 (1), vbad075, 2023 | | 2023 |
| Opportunities and Challenges in Statistics and Data Science Y Ji, RV Davuluri 23rd Annual Conference of Society of Statistics, Computer and Applications …, 2021 | | 2021 |
| Development of Informatics Methods for Analysis of Complex Gene Regulation and Transcriptome Diversity Data in Cancer Y Ji Northwestern University, 2021 | | 2021 |
Ramana V DavuluriProfessor of Biomedical Informatics, State University of New York at Stony Brook, Stony Brook, NYVerified email at stonybrookmedicine.edu