| Structure, variation, and assembly of the root-associated microbiomes of rice J Edwards, C Johnson*, C Santos-Medellín*, E Lurie, NK Podishetty, ... Proceedings of the National Academy of Sciences 112 (8), E911-E920, 2015 | 2540 | 2015 |
| Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice JA Edwards, CM Santos-Medellín, ZS Liechty, B Nguyen, E Lurie, ... PLoS biology 16 (2), e2003862, 2018 | 443 | 2018 |
| Drought stress results in a compartment-specific restructuring of the rice root-associated microbiomes C Santos-Medellín, J Edwards, Z Liechty, B Nguyen, V Sundaresan MBio 8 (4), 10.1128/mbio. 00764-17, 2017 | 400* | 2017 |
| Prolonged drought imparts lasting compositional changes to the rice root microbiome C Santos-Medellín*, Z Liechty*, J Edwards, B Nguyen, B Huang, ... Nature Plants, 1-13, 2021 | 172 | 2021 |
| Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities C Santos-Medellin, LA Zinke, AM Ter Horst, DL Gelardi, SJ Parikh, ... The ISME journal 15 (7), 1956-1970, 2021 | 147 | 2021 |
| Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity MV Grosso-Becerra*, C Santos-Medellín*, A González-Valdez, ... BMC genomics 15 (1), 1-14, 2014 | 130 | 2014 |
| Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations AM Ter Horst, C Santos-Medellín, JW Sorensen, LA Zinke, RM Wilson, ... Microbiome 9, 1-18, 2021 | 91 | 2021 |
| Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota J Edwards*, C Santos-Medellín*, B Nguyen, J Kilmer, Z Liechty, E Veliz, ... Genome biology 20 (1), 1-14, 2019 | 88 | 2019 |
| Comparative analysis of root microbiomes of rice cultivars with high and low methane emissions reveals differences in abundance of methanogenic archaea and putative upstream … Z Liechty, C Santos-Medellín, J Edwards, B Nguyen, D Mikhail, S Eason, ... Msystems 5 (1), 10.1128/msystems. 00897-19, 2020 | 52 | 2020 |
| Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands C Santos-Medellín, K Estera-Molina, M Yuan, J Pett-Ridge, MK Firestone, ... Proceedings of the National Academy of Sciences 119 (45), e2209132119, 2022 | 51 | 2022 |
| Extraction and 16S rRNA sequence analysis of microbiomes associated with rice roots J Edwards*, C Santos-Medellín*, V Sundaresan Bio-Protocol 8 (12), e2884, 2018 | 42 | 2018 |
| Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote‐expressed auxin biosynthesis genes I Khanday, C Santos‐Medellín, V Sundaresan New Phytologist 238 (2), 673-687, 2023 | 38* | 2023 |
| Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils C Santos-Medellín, SJ Blazewicz, J Pett-Ridge, MK Firestone, ... Nature Ecology & Evolution 7 (11), 1809-1822, 2023 | 35* | 2023 |
| Steady agronomic and genetic interventions are essential for sustaining productivity in intensive rice cropping JK Ladha, AM Radanielson, JE Rutkoski, RJ Buresh, A Dobermann, ... Proceedings of the National Academy of Sciences 118 (45), e2110807118, 2021 | 28 | 2021 |
| Substantial differences in soil viral community composition within and among four Northern California habitats DM Durham, ET Sieradzki, AM Ter Horst, C Santos-Medellín, CWA Bess, ... ISME communications 2 (1), 100, 2022 | 27 | 2022 |
| Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales LA Zinke, PN Evans, C Santos‐Medellín, AL Schroeder, DH Parks, ... Environmental Microbiology 23 (1), 340-357, 2021 | 27 | 2021 |
| DNase treatment improves viral enrichment in agricultural soil viromes JW Sorensen, LA Zinke, AM Ter Horst, C Santos-Medellín, A Schroeder, ... MSystems 6 (5), 10.1128/msystems. 00614-21, 2021 | 16 | 2021 |
| Acquisition of a complex root microbiome reshapes the transcriptomes of rice plants C Santos‐Medellín, J Edwards, B Nguyen, V Sundaresan New Phytologist 235 (5), 2008-2021, 2022 | 15 | 2022 |
| RNA viral communities are structured by host plant phylogeny in oak and conifer leaves AM ter Horst, JD Fudyma, A Bak, MS Hwang, C Santos-Medellín, ... Phytobiomes Journal 7 (2), 288-296, 2023 | 7 | 2023 |
| MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration MM Zdouc, K Blin, NLL Louwen, J Navarro, C Loureiro, CD Bader, ... Nucleic acids research 53 (D1), D678-D690, 2025 | 4 | 2025 |
Venkatesan SundaresanVerified email at ucdavis.edu