| Spatial atlas of the mouse central nervous system at molecular resolution H Shi*, Y He*, Y Zhou*, J Huang, K Maher, B Wang, Z Tang, S Luo, P Tan, ... Nature 622 (7983), 552-561, 2023 | 97 | 2023 |
| ClusterMap for multi-scale clustering analysis of spatial gene expression Y He*, X Tang*, J Huang, J Ren, H Zhou, K Chen, A Liu, H Shi, Z Lin, Q Li, ... Nature communications 12 (1), 5909, 2021 | 86 | 2021 |
| Explainable multi-task learning for multi-modality biological data analysis X Tang*, J Zhang*, Y He*, X Zhang, Z Lin, S Partarrieu, EB Hanna, Z Ren, ... Nature communications 14 (1), 2546, 2023 | 51 | 2023 |
| Controlling organoid symmetry breaking uncovers an excitable system underlying human axial elongation GM Anand, HC Megale, SH Murphy, T Weis, Z Lin, Y He, X Wang, J Liu, ... Cell 186 (3), 497-512. e23, 2023 | 49 | 2023 |
| Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape J Ren, H Zhou, H Zeng, CK Wang, J Huang, X Qiu, X Sui, Q Li, X Wu, ... Nature Methods 20 (5), 695-705, 2023 | 35 | 2023 |
| Multimodal charting of molecular and functional cell states via in situ electro-sequencing Q Li, Z Lin, R Liu, X Tang, J Huang, Y He, X Sui, W Tian, H Shen, H Zhou, ... Cell 186 (9), 2002-2017. e21, 2023 | 28* | 2023 |
| Soft bioelectronics for cardiac interfaces X Tang*, Y He*, J Liu Biophysics Reviews 3 (1), 2022 | 15 | 2022 |
| Scalable spatial single-cell transcriptomics and translatomics in 3D thick tissue blocks X Sui, JA Lo, S Luo, Y He, Z Tang, Z Lin, Y Zhou, WX Wang, J Liu, X Wang bioRxiv, 2024 | 6 | 2024 |
| Fine-tuning discrete diffusion models via reward optimization with applications to dna and protein design C Wang, M Uehara, Y He, A Wang, T Biancalani, A Lal, T Jaakkola, ... arXiv preprint arXiv:2410.13643, 2024 | 3 | 2024 |
| Towards a universal spatial molecular atlas of the mouse brain Y He, H Sheng, H Shi, WX Wang, Z Tang, J Liu, X Wang bioRxiv, 2024.05. 27.594872, 2024 | 1 | 2024 |
| End-to-end multimodal deep learning for real-time decoding of months-long neural activity from the same cells Y He*, A Marin-Llobet*, H Sheng, R Liu, J Liu bioRxiv, 2024.10. 14.618046, 2024 | | 2024 |
| Brain implantation of tissue-level-soft bioelectronics via embryonic development H Sheng, R Liu, Q Li, Z Lin, Y He, T Blum, H Zhao, X Tang, W Wang, L Jin, ... bioRxiv, 2024.05. 29.596533, 2024 | | 2024 |
