| Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress JM Tkach, A Yimit, AY Lee, M Riffle, M Costanzo, D Jaschob, JA Hendry, ... Nature cell biology 14 (9), 966-976, 2012 | 588 | 2012 |
| Assigning function to yeast proteins by integration of technologies TR Hazbun, L Malmström, S Anderson, BJ Graczyk, B Fox, M Riffle, ... Molecular cell 12 (6), 1353-1365, 2003 | 340 | 2003 |
| Transmembrane topology and signal peptide prediction using dynamic bayesian networks SM Reynolds, L Käll, ME Riffle, JA Bilmes, WS Noble PLoS computational biology 4 (11), e1000213, 2008 | 304 | 2008 |
| Kojak: efficient analysis of chemically cross-linked protein complexes MR Hoopmann, A Zelter, RS Johnson, M Riffle, MJ MacCoss, TN Davis, ... Journal of proteome research 14 (5), 2190-2198, 2015 | 211 | 2015 |
| Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast DA Skelly, GE Merrihew, M Riffle, CF Connelly, EO Kerr, M Johansson, ... Genome research 23 (9), 1496-1504, 2013 | 167 | 2013 |
| Large-scale prediction of protein-protein interactions from structures M Hue, M Riffle, JP Vert, WS Noble BMC bioinformatics 11, 1-9, 2010 | 125 | 2010 |
| Evaluating the performance of the astral mass analyzer for quantitative proteomics using data-independent acquisition LR Heil, E Damoc, TN Arrey, A Pashkova, E Denisov, J Petzoldt, ... Journal of proteome research 22 (10), 3290-3300, 2023 | 117 | 2023 |
| Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments LA Helgeson, A Zelter, M Riffle, MJ MacCoss, CL Asbury, TN Davis Proceedings of the National Academy of Sciences 115 (11), 2740-2745, 2018 | 92 | 2018 |
| Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns E Timmins-Schiffman, DH May, M Mikan, M Riffle, C Frazar, HR Harvey, ... The ISME journal 11 (2), 309-314, 2017 | 81 | 2017 |
| Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology L Malmström, M Riffle, CEM Strauss, D Chivian, TN Davis, R Bonneau, ... PLoS biology 5 (4), e76, 2007 | 72 | 2007 |
| ProXL (protein cross-linking database): a platform for analysis, visualization, and sharing of protein cross-linking mass spectrometry data M Riffle, D Jaschob, A Zelter, TN Davis Journal of Proteome Research 15 (8), 2863-2870, 2016 | 67 | 2016 |
| The Ndc80 complex bridges two Dam1 complex rings JO Kim, A Zelter, NT Umbreit, A Bollozos, M Riffle, R Johnson, ... Elife 6, e21069, 2017 | 65 | 2017 |
| MetaGOmics: a web-based tool for peptide-centric functional and taxonomic analysis of metaproteomics data M Riffle, DH May, E Timmins-Schiffman, MP Mikan, D Jaschob, WS Noble, ... Proteomes 6 (1), 2, 2017 | 61 | 2017 |
| The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling A Zelter, M Bonomi, JO Kim, NT Umbreit, MR Hoopmann, R Johnson, ... Nature communications 6 (1), 8673, 2015 | 61 | 2015 |
| Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex EM Kudalkar, EA Scarborough, NT Umbreit, A Zelter, DR Gestaut, M Riffle, ... Proceedings of the National Academy of Sciences 112 (41), E5583-E5589, 2015 | 59 | 2015 |
| The Proteome Folding Project: proteome-scale prediction of structure and function K Drew, P Winters, GL Butterfoss, V Berstis, K Uplinger, J Armstrong, ... Genome research 21 (11), 1981-1994, 2011 | 52 | 2011 |
| Proteomics data repositories M Riffle, JK Eng Proteomics 9 (20), 4653-4663, 2009 | 51 | 2009 |
| The yeast resource center public image repository: a large database of fluorescence microscopy images M Riffle, TN Davis BMC bioinformatics 11, 1-9, 2010 | 50 | 2010 |
| Bir1 is required for the tension checkpoint MM Shimogawa, PO Widlund, M Riffle, M Ess, TN Davis Molecular biology of the cell 20 (3), 915-923, 2009 | 48 | 2009 |
| The yeast resource center public data repository M Riffle, L Malmström, TN Davis Nucleic Acids Research 33 (suppl_1), D378-D382, 2005 | 44 | 2005 |
Michael MacCossProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu