| An integrated encyclopedia of DNA elements in the human genome. BE Bernstein, E Birney, I Dunham, ED Green, C Gunter, M Snyder Nature 489 (7414), 57, 2012 | 17409* | 2012 |
| Annotation of functional variation in personal genomes using RegulomeDB AP Boyle, EL Hong, M Hariharan, Y Cheng, MA Schaub, M Kasowski, ... Genome research 22 (9), 1790-1797, 2012 | 2939 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 2019 | 2014 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1724 | 2012 |
| Personal omics profiling reveals dynamic molecular and medical phenotypes R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ... Cell 148 (6), 1293-1307, 2012 | 1420 | 2012 |
| Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012 | 1080 | 2012 |
| Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014 | 980 | 2014 |
| Diversity and clonal selection in the human T-cell repertoire Q Qi, Y Liu, Y Cheng, J Glanville, D Zhang, JY Lee, RA Olshen, ... Proceedings of the National Academy of Sciences 111 (36), 13139-13144, 2014 | 805 | 2014 |
| Widespread contribution of transposable elements to the innovation of gene regulatory networks V Sundaram, Y Cheng, Z Ma, D Li, X Xing, P Edge, MP Snyder, T Wang Genome research 24 (12), 1963-1976, 2014 | 516 | 2014 |
| An encyclopedia of mouse DNA elements (Mouse ENCODE) Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ... Genome biology 13, 1-5, 2012 | 379 | 2012 |
| Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis M Yu, L Riva, H Xie, Y Schindler, TB Moran, Y Cheng, D Yu, R Hardison, ... Molecular cell 36 (4), 682-695, 2009 | 360 | 2009 |
| The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome YK Paik, SK Jeong, GS Omenn, M Uhlen, S Hanash, SY Cho, HJ Lee, ... Nature Biotechnology 30 (3), 221-223, 2012 | 330 | 2012 |
| Principles of regulatory information conservation between mouse and human Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ... Nature 515 (7527), 371-375, 2014 | 301 | 2014 |
| Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression Y Cheng, W Wu, SA Kumar, D Yu, W Deng, T Tripic, DC King, KB Chen, ... Genome research 19 (12), 2172-2184, 2009 | 274 | 2009 |
| Bromodomain protein Brd3 associates with acetylated GATA1 to promote its chromatin occupancy at erythroid target genes JM Lamonica, W Deng, S Kadauke, AE Campbell, R Gamsjaeger, ... Proceedings of the National Academy of Sciences 108 (22), E159, 2011 | 261 | 2011 |
| Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1 S Kadauke, MI Udugama, JM Pawlicki, JC Achtman, DP Jain, Y Cheng, ... Cell 150 (4), 725-737, 2012 | 255 | 2012 |
| Comparative analysis of regulatory information and circuits across distant species AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512 (7515), 453-456, 2014 | 231 | 2014 |
| SCL and associated proteins distinguish active from repressive GATA transcription factor complexes T Tripic, W Deng, Y Cheng, Y Zhang, CR Vakoc, GD Gregory, ... Blood, The Journal of the American Society of Hematology 113 (10), 2191-2201, 2009 | 223 | 2009 |
| CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity CR Lazzarotto, NL Malinin, Y Li, R Zhang, Y Yang, GH Lee, E Cowley, ... Nature biotechnology 38 (11), 1317-1327, 2020 | 212 | 2020 |
| Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity PWF Karmaus, X Chen, SA Lim, AA Herrada, TLM Nguyen, B Xu, ... Nature 565 (7737), 101-105, 2019 | 181 | 2019 |
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityVerified email at psu.edu