| Improved parameterization of phosphatidylinositide lipid headgroups for the martini 3 coarse-grain force field L Borges-Araújo, PCT Souza, F Fernandes, MN Melo Journal of Chemical Theory and Computation 18 (1), 357-373, 2021 | 48 | 2021 |
| Martini 3 coarse-grained force field for cholesterol L Borges-Araújo, AC Borges-Araújo, TN Ozturk, DP Ramirez-Echemendia, ... Journal of Chemical Theory and Computation 19 (20), 7387-7404, 2023 | 36 | 2023 |
| Pragmatic coarse-graining of proteins: models and applications L Borges-Araújo, I Patmanidis, AP Singh, LHS Santos, AK Sieradzan, ... Journal of Chemical Theory and Computation 19 (20), 7112-7135, 2023 | 35 | 2023 |
| SARS-CoV-2 variants impact RBD conformational dynamics and ACE2 accessibility M Valério, L Borges-Araújo, MN Melo, D Lousa, CM Soares Frontiers in Medical Technology 4, 1009451, 2022 | 21 | 2022 |
| Structure and lateral organization of phosphatidylinositol 4, 5-bisphosphate L Borges-Araújo, F Fernandes Molecules 25 (17), 3885, 2020 | 17 | 2020 |
| GōMartini 3: From large conformational changes in proteins to environmental bias corrections PCT Souza, LP Borges Araujo, C Brasnett, RA Moreira, F Grunewald, ... BioRxiv, 2024.04. 15.589479, 2024 | 13 | 2024 |
| OLIVES: A Go-like model for stabilizing protein structure via hydrogen bonding native contacts in the Martini 3 coarse-grained force field KB Pedersen, L Borges-Araújo, AD Stange, PCT Souza, SJ Marrink, ... Journal of Chemical Theory and Computation 20 (18), 8049-8070, 2024 | 12 | 2024 |
| Expulsion mechanism of the substrate-translocating subunit in ECF transporters C Thangaratnarajah, M Nijland, L Borges-Araújo, A Jeucken, ... Nature Communications 14 (1), 4484, 2023 | 10 | 2023 |
| Assessing the martini 3 protein model: A review of its path and potential L Borges-Araújo, GP Pereira, M Valério, PCT Souza Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 141014, 2024 | 9 | 2024 |
| Acyl-chain saturation regulates the order of phosphatidylinositol 4, 5-bisphosphate nanodomains L Borges-Araújo, MM Domingues, A Fedorov, NC Santos, MN Melo, ... Communications Chemistry 4 (1), 164, 2021 | 9 | 2021 |
| Bartender: Martini 3 Bonded Terms via Quantum Mechanics-Based Molecular Dynamics GP Pereira, R Alessandri, M Domínguez, R Araya-Osorio, L Grünewald, ... Journal of Chemical Theory and Computation 20 (13), 5763-5773, 2024 | 6 | 2024 |
| Martini 3 building blocks for Lipid Nanoparticle design LR Kjølbye, M Valério, M Paloncýová, L Borges-Araújo, ... | 5 | 2024 |
| Quantitative FRET Microscopy Reveals a Crucial Role of Cytoskeleton in Promoting PI(4,5)P2 Confinement MJ Sarmento, L Borges-Araújo, SN Pinto, N Bernardes, JC Ricardo, ... International Journal of Molecular Sciences 22 (21), 11727, 2021 | 2 | 2021 |
| The Martini 3 Lipidome: Expanded and Refined Parameters Improve Lipid Phase Behavior KB Pedersen, HI Ingólfsson, DP Ramirez-Echemendia, L Borges-Araújo, ... | 1 | 2024 |
| Impact of Ca2+-Induced PI(4,5)P2 Clusters on PH-YFP Organization and Protein-Protein Interactions L Borges-Araújo, ME Monteiro, D Mil-Homens, N Bernardes, ... Biomolecules 12 (7), 912, 2022 | | 2022 |
Paulo Cesar Telles de SouzaSenior Researcher at LBMC and group leader at CBPsmn (ENS de Lyon, CNRS)Verified email at ens-lyon.fr