| MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data DH Huson, S Beier, I Flade, A Górska, M El-Hadidi, S Mitra, ... PLoS computational biology 12 (6), e1004957, 2016 | 1683 | 2016 |
| Integrative analysis of environmental sequences using MEGAN4 DH Huson, S Mitra, HJ Ruscheweyh, N Weber, SC Schuster Genome research 21 (9), 1552-1560, 2011 | 1618 | 2011 |
| Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ... Nature microbiology 2 (2), 1-12, 2016 | 440 | 2016 |
| Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019 | 435 | 2019 |
| Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019 | 343 | 2019 |
| The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation C Engels, HJ Ruscheweyh, N Beerenwinkel, C Lacroix, C Schwab Frontiers in microbiology 7, 713, 2016 | 337 | 2016 |
| Mucispirillum schaedleri antagonizes Salmonella virulence to protect mice against colitis S Herp, S Brugiroux, D Garzetti, D Ring, LM Jochum, M Beutler, C Eberl, ... Cell host & microbe 25 (5), 681-694. e8, 2019 | 267 | 2019 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 266 | 2022 |
| Intestinal dysbiosis, barrier dysfunction, and bacterial translocation account for CKD–related systemic inflammation K Andersen, MS Kesper, JA Marschner, L Konrad, M Ryu, SK Vr, ... Journal of the American society of nephrology 28 (1), 76-83, 2017 | 260 | 2017 |
| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 255 | 2022 |
| Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022 | 184 | 2022 |
| Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation C Schwab, HJ Ruscheweyh, V Bunesova, VT Pham, N Beerenwinkel, ... Frontiers in microbiology 8, 95, 2017 | 178 | 2017 |
| Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting TA Khan, S Friedensohn, AR Gorter de Vries, J Straszewski, ... Science advances 2 (3), e1501371, 2016 | 135 | 2016 |
| Endotoxicity of lipopolysaccharide as a determinant of T-cell− mediated colitis induction in mice K Gronbach, I Flade, O Holst, B Lindner, HJ Ruscheweyh, A Wittmann, ... Gastroenterology 146 (3), 765-775, 2014 | 94 | 2014 |
| Bioinformatics for precision oncology J Singer, A Irmisch, HJ Ruscheweyh, F Singer, NC Toussaint, ... Briefings in bioinformatics 20 (3), 778-788, 2019 | 79 | 2019 |
| Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation J Zhang, C Lacroix, E Wortmann, HJ Ruscheweyh, S Sunagawa, ... BMC microbiology 19, 1-14, 2019 | 66 | 2019 |
| Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ... Microbiome 10 (1), 212, 2022 | 64 | 2022 |
| Functional and evolutionary significance of unknown genes from uncultivated taxa Á Rodríguez del Río, J Giner-Lamia, CP Cantalapiedra, J Botas, Z Deng, ... Nature 626 (7998), 377-384, 2024 | 46 | 2024 |
| Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans N Lang-Yona, JM Flores, R Haviv, A Alberti, J Poulain, C Belser, M Trainic, ... Communications Earth & Environment 3 (1), 121, 2022 | 35 | 2022 |
| NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis J Singer, HJ Ruscheweyh, AL Hofmann, T Thurnherr, F Singer, ... Bioinformatics 34 (1), 107-108, 2018 | 35 | 2018 |
Daniel H. HusonProfessor of Algorithms in Bioinformatics, University of TuebingenVerified email at uni-tuebingen.de
