Mark Blaxter

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Georgios KoutsovoulosFORTH, Institute of Computer Science, The Biodiversity Computing GroupVerified email at ics.forth.gr
Sujai KumarWellcome Sanger Institute, formerly University of EdinburghVerified email at sanger.ac.uk
John W. DaveyFios GenomicsVerified email at fiosgenomics.com
Jennifer DaubUniversity of EdinburghVerified email at ed.ac.uk
John ParkinsonSenior Scientist, Hospital for Sick ChildrenVerified email at utoronto.ca
Rick M MaizelsProfessor of Zoology, University of EdinburghVerified email at ed.ac.uk
Karim GharbiEarlham InstituteVerified email at earlham.ac.uk
Angus DavisonProfessor of Evolutionary Genetics, University of NottinghamVerified email at nottingham.ac.uk
Simon A BabayanSchool of Biodiversity, One Health and Veterinary Medicine (SBOHVM)Verified email at glasgow.ac.uk
Aziz AboobakerProfessor of Comparative and Functional Genomics, University of OxfordVerified email at biology.ox.ac.uk
Chris D. JigginsUniversity of CambridgeVerified email at zoo.cam.ac.uk
Makedonka MitrevaProfessor of Medicine, Washington University School of MedicineVerified email at wustl.edu
Eyualem AbebeElizabeth City State UniversityVerified email at mail.ecsu.edu
James WasmuthAssociate Professor, Faculty of Veterinary Medicine, University of CalgaryVerified email at ucalgary.ca
Davide PisaniProfessor of Phylogenomics. Schools of Biological & Earth Sciences. University of Bristol (UK)Verified email at bristol.ac.uk
Neil HallThe Earlham InstituteVerified email at earlham.ac.uk
Kanchon K. DasmahapatraProfessor of Evolutionary Biology, University of York, UKVerified email at york.ac.uk
Ralf SchmidUniversity of LeicesterVerified email at le.ac.uk
Judith E RisseBioinformatics, Wageningen UniversityVerified email at wur.nl
Omar Rota-StabelliAssociate Professor of Zoology, Centro C3A, University of Trento and Fondazione Mach, ItalyVerified email at fmach.it

Mark Blaxter

Tree of Life programme, Wellcome Sanger Institute

Verified email at sanger.ac.uk - Homepage

evolutionary genomics


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Genome-wide genetic marker discovery and genotyping using next-generation sequencing JW Davey, PA Hohenlohe, PD Etter, JQ Boone, JM Catchen, ML Blaxter Nature Reviews Genetics 12 (7), 499-510, 2011	2972	2011
A molecular evolutionary framework for the phylum Nematoda ML Blaxter, P De Ley, JR Garey, LX Liu, P Scheldeman, A Vierstraete, ... Nature 392 (6671), 71-75, 1998	2356	1998
BlobToolKit–interactive quality assessment of genome assemblies R Challis, E Richards, J Rajan, G Cochrane, M Blaxter G3: Genes, Genomes, Genetics 10 (4), 1361-1374, 2020	1662	2020
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita P Abad, J Gouzy, JM Aury, P Castagnone-Sereno, EGJ Danchin, ... Nature biotechnology 26 (8), 909-915, 2008	1503	2008
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature 487 (7405), 94-98, 2012	1247	2012
Defining operational taxonomic units using DNA barcode data M Blaxter, J Mann, T Chapman, F Thomas, C Whitton, R Floyd, E Abebe Philosophical Transactions of the Royal Society B: Biological Sciences 360 …, 2005	1089	2005
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads M Uliano-Silva, JGRN Ferreira, K Krasheninnikova, G Formenti, L Abueg, ... BMC bioinformatics 24 (1), 288, 2023	1039	2023
Molecular barcodes for soil nematode identification R Floyd, E Abebe, A Papert, M Blaxter Molecular ecology 11 (4), 839-850, 2002	1000	2002
RADSeq: next-generation population genetics JW Davey, ML Blaxter Briefings in functional genomics 9 (5-6), 416-423, 2010	986	2010
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? NJ Schurch, P Schofield, M Gierliński, C Cole, A Sherstnev, V Singh, ... Rna 22 (6), 839-851, 2016	941	2016
The promise of a DNA taxonomy ML Blaxter Philosophical Transactions of the Royal Society of London. Series B …, 2004	817	2004
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity AH Buck, G Coakley, F Simbari, HJ McSorley, JF Quintana, T Le Bihan, ... Nature communications 5 (1), 5488, 2014	795	2014
BlobTools: Interrogation of genome assemblies DR Laetsch, ML Blaxter F1000Research 6, 1287, 2017	765	2017
Phylogeny of Wolbachia in filarial nematodes C Bandi, TJC Anderson, C Genchi, ML Blaxter Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1998	760	1998
Genome-wide evidence for speciation with gene flow in Heliconius butterflies SH Martin, KK Dasmahapatra, NJ Nadeau, C Salazar, JR Walters, ... Genome research 23 (11), 1817-1828, 2013	737	2013
Systematic position and phylogeny P De Ley, M Blaxter The biology of nematodes, 1-30, 2002	736	2002
Draft genome of the filarial nematode parasite Brugia malayi E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ... Science 317 (5845), 1756-1760, 2007	732	2007
A supergene determines highly divergent male reproductive morphs in the ruff C Küpper, M Stocks, JE Risse, N Dos Remedios, LL Farrell, SB McRae, ... Nature genetics 48 (1), 79-83, 2016	535	2016
Genomic architecture and introgression shape a butterfly radiation NB Edelman, PB Frandsen, M Miyagi, B Clavijo, J Davey, RB Dikow, ... Science 366 (6465), 594-599, 2019	468	2019
IL-4 dependent alternatively-activated macrophages have a distinctive in vivo gene expression phenotype P Loke, MG Nair, J Parkinson, D Guiliano, M Blaxter, JE Allen BMC immunology 3, 1-11, 2002	459	2002

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