| Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... arXiv preprint arXiv:1710.04038, 2017 | 1181* | 2017 |
| The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 363 | 2019 |
| Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele Microbiome 7, 1-18, 2019 | 286 | 2019 |
| Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome I Thiele, S Sahoo, A Heinken, J Hertel, L Heirendt, MK Aurich, ... Molecular systems biology 16 (5), e8982, 2020 | 182 | 2020 |
| The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities F Baldini, A Heinken, L Heirendt, S Magnusdottir, RMT Fleming, I Thiele Bioinformatics 35 (13), 2332-2334, 2019 | 142 | 2019 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 93 | 2021 |
| DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia L Heirendt, I Thiele, RMT Fleming Bioinformatics btw838, 2016 | 41 | 2016 |
| Model-based assessment of mammalian cell metabolic functionalities using omics data A Richelle, BP Kellman, AT Wenzel, AWT Chiang, T Reagan, ... Cell reports methods 1 (3), 2021 | 35* | 2021 |
| Personalized modeling of the human gut microbiome reveals distinct bile acid deconjugation and biotransformation potential in healthy and IBD individuals A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele BioRxiv, 229138, 2017 | 32 | 2017 |
| When metabolism meets physiology: Harvey and harvetta. bioRxiv I Thiele, S Sahoo, A Heinken, L Heirendt, MK Aurich, A Noronha, ... | 26* | 2018 |
| GigaSOM. jl: High-performance clustering and visualization of huge cytometry datasets M Kratochvíl, O Hunewald, L Heirendt, V Verissimo, J Vondrášek, ... GigaScience 9 (11), giaa127, 2020 | 12 | 2020 |
| COBREXA. jl: constraint-based reconstruction and exascale analysis M Kratochvíl, L Heirendt, SE Wilken, T Pusa, S Arreckx, A Noronha, ... Bioinformatics 38 (4), 1171-1172, 2022 | 10 | 2022 |
| Aircraft landing gear greased slider bearing steady-state thermo-elastohydrodynamic concept model L Heirendt, HHT Liu, P Wang Tribology International 82, 453-463, 2015 | 9 | 2015 |
| Characteristic aircraft landing gear thermo-tribo-mechanical model L Heirendt, HHT Liu, P Wang ASME International Mechanical Engineering Congress and Exposition 45196 …, 2012 | 6 | 2012 |
| Aircraft Landing Gear Thermo-Tribomechanical Model and Sensitivity Study L Heirendt, HHT Liu, P Wang Journal of Aircraft 51 (2), 511-519, 2014 | 5 | 2014 |
| Lubrication mechanism design for aircraft landing gear bearings L Heirendt, HHT Liu, P Wang US Patent 10,591,013, 2020 | 2 | 2020 |
| ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software L Heirendt, S Arreckx, C Trefois, Y Yarosz, M Vyas, VP Satagopam, ... arXiv preprint arXiv:1712.05236, 2017 | 1 | 2017 |
| Aircraft landing gear thermo-tribomechanical model development L Heirendt University of Toronto (Canada), 2015 | 1 | 2015 |
| Visualization of automatically combined disease maps and pathway diagrams for rare diseases P Gawron, D Hoksza, J Piñero, M Peña-Chilet, M Esteban-Medina, ... Frontiers in bioinformatics 3, 1101505, 2023 | | 2023 |
| COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms I Kuperstein, C Auffray, RW Overall, L Matthews, D Börnigen, J Somers, ... (No Title), 2020 | | 2020 |
Ines ThieleUniversity of GalwayVerified email at universityofgalway.ie