Bent Petersen

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Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenVerified email at sund.ku.dk
M Thomas P GilbertUniversity of CopenhagenVerified email at sund.ku.dk
Morten NielsenDepartment of Health Technology, The Technical University ofVerified email at cbs.dtu.dk
Shyam GopalakrishnanAssociate Professor, Globe Institute, University of CopenhagenVerified email at sund.ku.dk
Mikkel-Holger S. SindingUniversity of CopenhagenVerified email at bio.ku.dk
Love DalénProfessor, Stockholm UniversityVerified email at zoologi.su.se
Jakob Schmidt JespersenUniversity of Copenhagen - Centre for Medical ParasitologyVerified email at sund.ku.dk
Thomas Nordahl PetersenDTU Food, National Food Institute, DenmarkVerified email at food.dtu.dk
Claus LundegaardDirector, ZS Associates, DiscoveryVerified email at zs.com
Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of DenmarkVerified email at bio.ku.dk
paolo marcatiliHead of Antibody Design, Novo NordiskVerified email at novonordisk.com
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkVerified email at dtu.dk
Filipe G. VieiraNatural History Museum, University of CopenhagenVerified email at snm.ku.dk
Andrew MillardAssociate Professor, University of LeicesterVerified email at le.ac.uk
Martha ClokieUniversity of LeicesterVerified email at le.ac.uk
Thomas LavstsenProfessor, Copenhagen UniversityVerified email at sund.ku.dk
Tomas Marques-BonetICREA Research Professor @ Universitat Pompeu Fabra / IBE (CSIC-UPF) / CNAGVerified email at upf.edu
Guojie ZhangZhejiang UniversityVerified email at zju.edu.cn
Anders Johannes HansenProfessor in Genetic Identification, Head of GLOBE Institute, University of CopenhagenVerified email at sund.ku.dk
Louise TurnerRigshospitalet and the University of CopenhagenVerified email at sund.ku.dk

Bent Petersen

Senior Researcher, PhD, Globe institute, University of Copenhagen

Verified email at sund.ku.dk

Next Generation Sequencing metagenomics assembly Neural networks bioinformatics


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Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	2016	2014
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ... Nature 499 (7456), 74-78, 2013	1031	2013
Global Monitoring of Antimicrobial Resistance Based on Metagenomics Analyses of Urban Sewage RS Hendriksen, P Munk, P Njage, B van Bunnik, L McNally, ... Nature Communication 10 (1), 1124, 2019	848	2019
A generic method for assignment of reliability scores applied to solvent accessibility predictions B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard BMC structural biology 9 (1), 51, 2009	745	2009
NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning MS Klausen, MC Jespersen, H Nielsen, KK Jensen, VI Jurtz, ... Proteins: Structure, Function, and Bioinformatics 87 (6), 520-527, 2019	598	2019
Dense sampling of bird diversity increases power of comparative genomics S Feng, J Stiller, Y Deng, J Armstrong, Q Fang, AH Reeve, D Xie, G Chen, ... Nature 587 (7833), 252-257, 2020	371	2020
Prehistoric genomes reveal the genetic foundation and cost of horse domestication M Schubert, H Jónsson, D Chang, C Der Sarkissian, L Ermini, A Ginolhac, ... Proceedings of the National Academy of Sciences 111 (52), E5661-E5669, 2014	358	2014
Speciation with gene flow in equids despite extensive chromosomal plasticity H Jónsson, M Schubert, A Seguin-Orlando, A Ginolhac, L Petersen, ... Proceedings of the National Academy of Sciences 111 (52), 18655-18660, 2014	244	2014
Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse C Der Sarkissian, L Ermini, M Schubert, MA Yang, P Librado, M Fumagalli, ... Current Biology 25 (19), 2577-2583, 2015	235	2015
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments P Librado, C Der Sarkissian, L Ermini, M Schubert, H Jónsson, ... Proceedings of the National Academy of Sciences 112 (50), E6889-E6897, 2015	196	2015
Structural conservation despite huge sequence diversity allows EPCR binding by the PfEMP1 family implicated in severe childhood malaria CKY Lau, L Turner, JS Jespersen, ED Lowe, B Petersen, CW Wang, ... Cell host & microbe 17 (1), 118-129, 2015	182	2015
Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing Gigascience, 2017	179	2017
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning MH Høie, EN Kiehl, B Petersen, M Nielsen, O Winther, H Nielsen, ... Nucleic acids research 50 (W1), W510-W515, 2022	178	2022
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference L Maretty, JM Jensen, B Petersen, JA Sibbesen, S Liu, P Villesen, L Skov, ... Nature 548 (7665), 87-91, 2017	168	2017
The tuatara genome reveals ancient features of amniote evolution NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ... Nature 584 (7821), 403-409, 2020	146	2020
Interspecific gene flow shaped the evolution of the genus Canis S Gopalakrishnan, MHS Sinding, J Ramos-Madrigal, J Niemann, ... Current Biology 28 (21), 3441-3449. e5, 2018	138	2018
Palaeogenomic insights into the origins of French grapevine diversity J Ramos-Madrigal, AKW Runge, L Bouby, T Lacombe, ... Nature plants 5 (6), 595-603, 2019	122	2019
NetTurnP–neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features B Petersen, C Lundegaard, TN Petersen PLoS One 5 (11), e15079, 2010	116	2010
Plasmodium falciparum var genes expressed in children with severe malaria encode CIDRα1 domains TGTTL Jakob S Jespersen, Christian W Wang, Sixbert I Mkumbaye, Daniel TR ... EMBO Molecular Medicine, 2016	104	2016
Arctic-adapted dogs emerged at the Pleistocene–Holocene transition MHS Sinding, S Gopalakrishnan, J Ramos-Madrigal, M de Manuel, ... Science 368 (6498), 1495-1499, 2020	93	2020

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