Paul Hohenlohe

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Andrew StorferEastlick Distinguished Professor, Washington State UniversityVerified email at wsu.edu
Gordon LuikartProfessor of conservation genetics and landscape genomicsVerified email at umontana.edu
William CreskoLorry Lokey Chair & Professor of Bioengineering, University of OregonVerified email at uoregon.edu
Menna JonesAustralian Research Council Future Fellow, University of TasmaniaVerified email at utas.edu.au
Hamish McCallumGriffith School of Environment and Science and Centre for Planetary Health and Food SecurityVerified email at griffith.edu.au
Rodrigo HamedeSchool of Natural Sciences, University of TasmaniaVerified email at utas.edu.au
Julian M CatchenUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Fred W. AllendorfRegents Professor Emeritus, University of MontanaVerified email at umontana.edu
Kimberly R. AndrewsFred Hutch Cancer CenterVerified email at fredhutch.org
Amanda StahlkeAssistant Professor of Biology, Colorado Mesa UniversityVerified email at coloradomesa.edu
W. Chris FunkProfessor, Colorado State UniversityVerified email at colostate.edu
Lisette WaitsUniversity of IdahoVerified email at uidaho.edu
Stevan J ArnoldIntegrative Biology, Oregon State UniversityVerified email at science.oregonstate.edu
Alexandra K FraikRocky Mountain Research Station, USDA Forest ServiceVerified email at usda.gov

Paul Hohenlohe

University of Idaho

Verified email at uidaho.edu

evolutionary genetics conservation genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Stacks: an analysis tool set for population genomics J Catchen, PA Hohenlohe, S Bassham, A Amores, WA Cresko Molecular ecology 22 (11), 3124-3140, 2013	4122	2013
Genome-wide genetic marker discovery and genotyping using next-generation sequencing JW Davey, PA Hohenlohe, PD Etter, JQ Boone, JM Catchen, ML Blaxter Nature Reviews Genetics 12 (7), 499-510, 2011	2971	2011
Stacks: building and genotyping loci de novo from short-read sequences JM Catchen, A Amores, P Hohenlohe, W Cresko, JH Postlethwait G3: Genes, Genomes, Genetics 1 (3), 171-182, 2011	2244	2011
Genomics and the future of conservation genetics FW Allendorf, PA Hohenlohe, G Luikart Nature Reviews Genetics 11 (10), 697-709, 2010	1808	2010
Harnessing the power of RADseq for ecological and evolutionary genomics KR Andrews, JM Good, MR Miller, G Luikart, PA Hohenlohe Nature Reviews Genetics 17 (2), 81-92, 2016	1687	2016
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags PA Hohenlohe, S Bassham, PD Etter, N Stiffler, EA Johnson, WA Cresko PLoS Genetics 6 (2), e1000862, 2010	1678	2010
Genomics and the origin of species O Seehausen, RK Butlin, I Keller, CE Wagner, JW Boughman, ... Nature Reviews Genetics 15 (3), 176-192, 2014	1115	2014
Harnessing genomics for delineating conservation units WC Funk, JK McKay, PA Hohenlohe, FW Allendorf Trends in ecology & evolution 27 (9), 489-496, 2012	1111	2012
Genotyping-by-sequencing in ecological and conservation genomics SR Narum, CA Buerkle, JW Davey, MR Miller, PA Hohenlohe Molecular ecology 22 (11), 2841, 2013	683	2013
Resolving postglacial phylogeography using high-throughput sequencing KJ Emerson, CR Merz, JM Catchen, PA Hohenlohe, WA Cresko, ... Proceedings of the National Academy of Sciences 107 (37), 16196-16200, 2010	569	2010
Estimating nonlinear selection gradients using quadratic regression coefficients: double or nothing? JR Stinchcombe, AF Agrawal, PA Hohenlohe, SJ Arnold, MW Blows Evolution 62 (9), 2435-2440, 2008	535	2008
Population genomics for wildlife conservation and management PA Hohenlohe, WC Funk, OP Rajora Molecular Ecology 30 (1), 62-82, 2021	502	2021
SNP discovery and genotyping for evolutionary genetics using RAD sequencing PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko Molecular Methods for Evolutionary Genetics, 157-178, 2011	487	2011
UNDERSTANDING THE EVOLUTION AND STABILITY OF THE G‐MATRIX SJ Arnold, R Bürger, PA Hohenlohe, BC Ajie, AG Jones Evolution 62 (10), 2451-2461, 2008	485	2008
Next‐generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout PA HOHENLOHE, SJ AMISH, JM CATCHEN, FW ALLENDORF, ... Molecular Ecology Resources 11, 117-122, 2011	480	2011
Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved S Hoban, M Bruford, JDU Jackson, M Lopes-Fernandes, M Heuertz, ... Biological Conservation 248, 108654, 2020	476	2020
Rapid evolution of a native species following invasion by a congener YE Stuart, TS Campbell, PA Hohenlohe, RG Reynolds, LJ Revell, ... Science 346 (6208), 463-466, 2014	379	2014
Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics JL Anderson, AR Marí, I Braasch, A Amores, P Hohenlohe, P Batzel, ... PloS one 7 (7), e40701, 2012	264	2012
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes PA Hohenlohe, S Bassham, M Currey, WA Cresko Philosophical Transactions of the Royal Society B: Biological Sciences 367 …, 2012	255	2012
Using population genomics to detect selection in natural populations: key concepts and methodological considerations PA Hohenlohe, PC Phillips, WA Cresko International journal of plant sciences 171 (9), 1059, 2010	233	2010

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