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Rahul Satija
Rahul Satija
Core Faculty Member, New York Genome Center. Department of Biology, NYU
Verified email at nygenome.org - Homepage
Title
Cited by
Cited by
Year
Comprehensive integration of single-cell data
T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck, ...
cell 177 (7), 1888-1902. e21, 2019
125342019
Integrating single-cell transcriptomic data across different conditions, technologies, and species
A Butler, P Hoffman, P Smibert, E Papalexi, R Satija
Nature biotechnology 36 (5), 411-420, 2018
103082018
Integrated analysis of multimodal single-cell data
Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ...
Cell 184 (13), 3573-3587. e29, 2021
98312021
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
EZ Macosko, A Basu, R Satija, J Nemesh, K Shekhar, M Goldman, I Tirosh, ...
Cell 161 (5), 1202-1214, 2015
74942015
Spatial reconstruction of single-cell gene expression data
R Satija, JA Farrell, D Gennert, AF Schier, A Regev
Nature biotechnology 33 (5), 495-502, 2015
54692015
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
C Hafemeister, R Satija
Genome biology 20 (1), 296, 2019
34582019
Simultaneous epitope and transcriptome measurement in single cells
M Stoeckius, C Hafemeister, W Stephenson, B Houck-Loomis, ...
Nature methods 14 (9), 865-868, 2017
28532017
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
AC Villani, R Satija, G Reynolds, S Sarkizova, K Shekhar, J Fletcher, ...
Science 356 (6335), eaah4573, 2017
24102017
The human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
22912017
Single-cell RNA sequencing to explore immune cell heterogeneity
E Papalexi, R Satija
Nature Reviews Immunology 18 (1), 35-45, 2018
14932018
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
AK Shalek, R Satija, X Adiconis, RS Gertner, JT Gaublomme, ...
Nature 498 (7453), 236-240, 2013
13922013
The Genome of the Sea Urchin Strongylocentrotus purpuratus
E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, ...
Science 314 (5801), 941-952, 2006
12882006
Integrative single-cell analysis
T Stuart, R Satija
Nature reviews genetics 20 (5), 257-272, 2019
12842019
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5′ sites
S Schwartz, MR Mumbach, M Jovanovic, T Wang, K Maciag, GG Bushkin, ...
Cell reports 8 (1), 284-296, 2014
12352014
Dictionary learning for integrative, multimodal and scalable single-cell analysis
Y Hao, T Stuart, MH Kowalski, S Choudhary, P Hoffman, A Hartman, ...
Nature biotechnology 42 (2), 293-304, 2024
11812024
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
AK Shalek, R Satija, J Shuga, JJ Trombetta, D Gennert, D Lu, P Chen, ...
Nature 510 (7505), 363-369, 2014
11212014
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
I Tirosh, AS Venteicher, C Hebert, LE Escalante, AP Patel, K Yizhak, ...
Nature 539 (7628), 309-313, 2016
11032016
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA
S Schwartz, DA Bernstein, MR Mumbach, M Jovanovic, RH Herbst, ...
Cell 159 (1), 148-162, 2014
10202014
Single-cell chromatin state analysis with Signac
T Stuart, A Srivastava, S Madad, CA Lareau, R Satija
Nature methods 18 (11), 1333-1341, 2021
9792021
Landscape of X chromosome inactivation across human tissues
T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall, R Satija, M Aguirre, ...
Nature 550 (7675), 244-248, 2017
9722017
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