| SwissParam: a fast force field generation tool for small organic molecules V Zoete, MA Cuendet, A Grosdidier, O Michielin Journal of computational chemistry 32 (11), 2359-2368, 2011 | 2042 | 2011 |
| Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl Journal of chemical theory and computation 6 (2), 459-466, 2010 | 1164 | 2010 |
| Transport domain unlocking sets the uptake rate of an aspartate transporter N Akyuz, ER Georgieva, Z Zhou, S Stolzenberg, MA Cuendet, ... Nature 518 (7537), 68-73, 2015 | 183 | 2015 |
| On the calculation of velocity-dependent properties in molecular dynamics simulations using the leapfrog integration algorithm MA Cuendet, WF van Gunsteren The Journal of chemical physics 127 (18), 2007 | 178 | 2007 |
| Acquired resistance to anti-MAPK targeted therapy confers an immune-evasive tumor microenvironment and cross-resistance to immunotherapy in melanoma L Haas, A Elewaut, CL Gerard, C Umkehrer, L Leiendecker, M Pedersen, ... Nature cancer 2 (7), 693-708, 2021 | 167 | 2021 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption D Froelicher, JR Troncoso-Pastoriza, JL Raisaro, MA Cuendet, JS Sousa, ... Nature communications 12 (1), 5910, 2021 | 156 | 2021 |
| Late-onset and long-lasting immune-related adverse events from immune checkpoint-inhibitors: An overlooked aspect in immunotherapy E Ghisoni, A Wicky, H Bouchaab, M Imbimbo, J Delyon, BG Moura, ... European journal of cancer 149, 153-164, 2021 | 139 | 2021 |
| Protein-protein interaction investigated by steered molecular dynamics: the TCR-pMHC complex MA Cuendet, O Michielin Biophysical journal 95 (8), 3575-3590, 2008 | 129 | 2008 |
| Heating and flooding: A unified approach for rapid generation of free energy surfaces M Chen, MA Cuendet, ME Tuckerman The Journal of Chemical Physics 137 (2), 2012 | 93 | 2012 |
| Structure-based, rational design of T cell receptors V Zoete, M Irving, M Ferber, MA Cuendet, O Michielin Frontiers in Immunology 4 (268), 2013 | 87 | 2013 |
| Allosteric mechanisms of molecular machines at the membrane: transport by sodium-coupled symporters MV LeVine, MA Cuendet, G Khelashvili, H Weinstein Chemical reviews 116 (11), 6552-6587, 2016 | 80 | 2016 |
| Turning tumors from cold to inflamed to improve immunotherapy response CL Gerard, J Delyon, A Wicky, K Homicsko, MA Cuendet, O Michielin Cancer treatment reviews 101, 102227, 2021 | 74 | 2021 |
| Free energy reconstruction from metadynamics or adiabatic free energy dynamics simulations MA Cuendet, ME Tuckerman Journal of chemical theory and computation 10 (8), 2975-2986, 2014 | 73 | 2014 |
| Substrate-modulated unwinding of transmembrane helices in the NSS transporter LeuT PS Merkle, K Gotfryd, MA Cuendet, KZ Leth-Espensen, U Gether, ... Science advances 4 (5), eaar6179, 2018 | 56 | 2018 |
| Cholesterol promotes protein binding by affecting membrane electrostatics and solvation properties M Doktorova, FA Heberle, RL Kingston, G Khelashvili, MA Cuendet, ... Biophysical journal 113 (9), 2004-2015, 2017 | 52 | 2017 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 52 | 2016 |
| How T cell receptors interact with peptide‐MHCs: A multiple steered molecular dynamics study MA Cuendet, V Zoete, O Michielin Proteins: Structure, Function, and Bioinformatics 79 (11), 3007-3024, 2011 | 51 | 2011 |
| The Jarzynski identity derived from general Hamiltonian or non-Hamiltonian dynamics reproducing NVT or NPT ensembles MA Cuendet The Journal of chemical physics 125 (14), 2006 | 49 | 2006 |
| Statistical Mechanical Derivation of Jarzynski’s Identity<? format?> for Thermostated Non-Hamiltonian Dynamics MA Cuendet Physical review letters 96 (12), 120602, 2006 | 45 | 2006 |
| Optical Spectra of Cu (II)− Azurin by Hybrid TDDFT-Molecular Dynamics Simulations M Cascella, MA Cuendet, I Tavernelli, U Rothlisberger The Journal of Physical Chemistry B 111 (34), 10248-10252, 2007 | 44 | 2007 |
Harel WeinsteinProfessor of Professor of Physiology and Biophysics, Weill Cornell Medicine, Cornell U.Verified email at med.cornell.edu