| The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans The Tabula Sapiens Consortium*, RC Jones, J Karkanias, MA Krasnow, ... Science 376 (6594), eabl4896, 2022 | 680 | 2022 |
| Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells A Byrne, AE Beaudin, HE Olsen, M Jain, C Cole, T Palmer, RM DuBois, ... Nature communications 8 (1), 16027, 2017 | 425 | 2017 |
| Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA R Volden, T Palmer, A Byrne, C Cole, RJ Schmitz, RE Green, C Vollmers Proceedings of the National Academy of Sciences 115 (39), 9726-9731, 2018 | 222 | 2018 |
| Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... Science translational medicine 13 (612), eabh2624, 2021 | 198 | 2021 |
| Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment CA Trujillo, ES Rice, NK Schaefer, IA Chaim, EC Wheeler, AA Madrigal, ... Science 371 (6530), eaax2537, 2021 | 142 | 2021 |
| Realizing the potential of full-length transcriptome sequencing A Byrne, C Cole, R Volden, C Vollmers Philosophical Transactions of the Royal Society B 374 (1786), 20190097, 2019 | 135 | 2019 |
| Puma genomes from North and South America provide insights into the genomic consequences of inbreeding NF Saremi, MA Supple, A Byrne, JA Cahill, LL Coutinho, L Dalén, ... Nature communications 10 (1), 4769, 2019 | 105 | 2019 |
| Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS A Sarma, SA Christenson, A Byrne, E Mick, AO Pisco, C DeVoe, T Deiss, ... Nature communications 12 (1), 5152, 2021 | 66 | 2021 |
| Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing J Liu, V Tran, VNP Vemuri, A Byrne, M Borja, YJ Kim, S Agarwal, R Wang, ... Life science alliance 6 (1), 2023 | 60* | 2023 |
| Linked genetic variation and not genome structure causes widespread differential expression associated with chromosomal inversions I Said, A Byrne, V Serrano, C Cardeno, C Vollmers, R Corbett-Detig Proceedings of the National Academy of Sciences 115 (21), 5492-5497, 2018 | 55 | 2018 |
| Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing C Cole, A Byrne, M Adams, R Volden, C Vollmers Genome Research 30 (4), 589-601, 2020 | 50 | 2020 |
| Tn5Prime, a Tn5 based 5′ capture method for single cell RNA-seq C Cole, A Byrne, AE Beaudin, EC Forsberg, C Vollmers Nucleic acids research 46 (10), e62-e62, 2018 | 47 | 2018 |
| Horizontal transmission and recombination maintain forever young bacterial symbiont genomes SL Russell, E Pepper-Tunick, J Svedberg, A Byrne, J Ruelas Castillo, ... PLoS Genetics 16 (8), e1008935, 2020 | 43 | 2020 |
| Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus) A Byrne, MA Supple, R Volden, KL Laidre, B Shapiro, C Vollmers Frontiers in genetics 10, 643, 2019 | 36 | 2019 |
| COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone A Sarma, SA Christenson, E Mick, C DeVoe, T Deiss, AO Pisco, R Ghale, ... Research square, 2021 | 33 | 2021 |
| Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19 A Tsitsiklis, BS Zha, A Byrne, C Devoe, S Levan, E Rackaityte, S Sunshine, ... Research Square, 2021 | 30 | 2021 |
| Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19: Anti-IFN antibodies in critical … MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... BioRxiv, 2021 | 28 | 2021 |
| Identifying and quantifying isoforms from accurate full-length transcriptome sequencing reads with Mandalorion R Volden, KD Schimke, A Byrne, D Dubocanin, M Adams, C Vollmers Genome Biology 24 (1), 167, 2023 | 17 | 2023 |
| Hyperinflammatory ARDS is characterized by interferon-stimulated gene expression, T-cell activation, and an altered metatranscriptome in tracheal aspirates A Sarma, SA Christenson, BS Zha, A Oliveira, LPA Neyton, E Mick, ... medRxiv, 2022 | 11 | 2022 |
| An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus NF Saremi, J Oppenheimer, C Vollmers, B O’Connell, SA Milne, A Byrne, ... Journal of Heredity 112 (4), 377-384, 2021 | 6 | 2021 |