| Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways KE Medvedev, LN Kinch, RD Schaeffer, NV Grishin PLoS computational biology 15 (12), e1007569, 2019 | 55 | 2019 |
| A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit KE Medvedev, LN Kinch, RD Schaeffer, J Pei, NV Grishin Journal of Molecular Biology 433 (4), 166788, 2021 | 48 | 2021 |
| Functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold KE Medvedev, LN Kinch, NV Grishin Protein Science 27 (8), 1450-1463, 2018 | 23 | 2018 |
| Recent advances suggest increased influence of selective pressure in allostery AS Bhat, RD Schaeffer, L Kinch, KE Medvedev, NV Grishin Current Opinion in Structural Biology 62, 183-188, 2020 | 15 | 2020 |
| ECOD: identification of distant homology among multidomain and transmembrane domain proteins RD Schaeffer, L Kinch, KE Medvedev, J Pei, H Cheng, N Grishin BMC Molecular and Cell Biology 20, 1-11, 2019 | 15 | 2019 |
| Integrated Molecular Analysis Reveals 2 Distinct Subtypes of Pure Seminoma of the Testis KE Medvedev, AV Savelyeva, KS Chen, A Bagrodia, L Jia, NV Grishin Cancer Informatics 21, 11769351221132634, 2022 | 13 | 2022 |
| Molecular dynamics simulations of the Nip7 proteins from the marine deep-and shallow-water Pyrococcus species KE Medvedev, NA Alemasov, YN Vorobjev, EV Boldyreva, NA Kolchanov, ... BMC Structural Biology 14, 1-21, 2014 | 11 | 2014 |
| Seminoma subtypes differ in the organization and functional state of the immune microenvironment AV Savelyeva, KE Medvedev 3 Biotech 13 (3), 110, 2023 | 10 | 2023 |
| ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 RD Schaeffer, J Zhang, KE Medvedev, LN Kinch, Q Cong, NV Grishin PLOS Computational Biology 20 (2), e1011586, 2024 | 9 | 2024 |
| Completeness and Consistency in Structural Domain Classifications RD Schaeffer, LN Kinch, J Pei, KE Medvedev, NV Grishin ACS omega 6 (24), 15698-15707, 2021 | 8 | 2021 |
| Pathogenic mutation hotspots in protein kinase domain structure KE Medvedev, RD Schaeffer, J Pei, NV Grishin Protein Science 32 (9), e4750, 2023 | 4 | 2023 |
| Important role of hydrophobic interactions in high-pressure adaptation of proteins DA Afonnikov, KE Medvedev, KV Gunbin, NA Kolchanov Doklady. Biochemistry and biophysics 438 (1), 113, 2011 | 4 | 2011 |
| ECOD: integrating classifications of protein domains from experimental and predicted structures RD Schaeffer, KE Medvedev, A Andreeva, SR Chuguransky, BL Pinto, ... Nucleic Acids Research 53 (D1), D411-D418, 2025 | 3 | 2025 |
| DrugDomain: the evolutionary context of drugs and small molecules bound to domains KE Medvedev, RD Schaeffer, NV Grishin Protein Science 33 (8), e5116, 2024 | 3 | 2024 |
| Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains KE Medvedev, RD Schaeffer, KS Chen, NV Grishin Scientific Reports 13 (1), 11988, 2023 | 3 | 2023 |
| Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions KE Medvedev, NA Kolchanov, DA Afonnikov Journal of bioinformatics and computational biology 15 (02), 1650036, 2017 | 3 | 2017 |
| Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands KE Medvedev, J Zhang, RD Schaeffer, LN Kinch, Q Cong, NV Grishin Scientific Reports 14 (1), 12260, 2024 | 2 | 2024 |
| DisEnrich: database of enriched regions in human dark proteome KE Medvedev, J Pei, NV Grishin Bioinformatics 38 (7), 1870-1876, 2022 | 2 | 2022 |
| High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations KE Medvedev, NA Kolchanov, DA Afonnikov Journal of Biomolecular Structure and Dynamics 36 (1), 68-82, 2018 | 2 | 2018 |
| The Potential of Single Cell RNA-Sequencing Data for the Prediction of Gastric Cancer Serum Biomarkers KE Medvedev, AV Savelyeva, A Bagrodia, NV Grishin Mathematical and Computational Oncology: Second International Symposium …, 2020 | 1 | 2020 |
Nick GrishinUT Southwestern Medical CenterVerified email at utsouthwestern.edu
