Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 729 | 2020 |
Recent advances in de novo protein design: principles, methods, and applications X Pan, T Kortemme Journal of Biological Chemistry 296, 2021 | 203 | 2021 |
Molecularly defined and spatially resolved cell atlas of the whole mouse brain M Zhang, X Pan, W Jung, AR Halpern, SW Eichhorn, Z Lei, L Cohen, ... Nature 624 (7991), 343-354, 2023 | 193 | 2023 |
Structure of the AAA protein Msp1 reveals mechanism of mislocalized membrane protein extraction L Wang, A Myasnikov, X Pan, P Walter Elife 9, e54031, 2020 | 64 | 2020 |
Expanding the space of protein geometries by computational design of de novo fold families X Pan, MC Thompson, Y Zhang, L Lin, JS Fraser, MJS Kelly, T Kortemme Science 369 (6507), 1132-1136, 2020 | 62 | 2020 |
Design, construction, and characterization of a set of biosensors for aromatic compounds H Xue, H Shi, Z Yu, S He, S Liu, Y Hou, X Pan, H Wang, P Zheng, C Cui, ... ACS synthetic biology 3 (12), 1011-1014, 2014 | 55 | 2014 |
Better together: Elements of successful scientific software development in a distributed collaborative community J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ... PLoS computational biology 16 (5), e1007507, 2020 | 37 | 2020 |
Studies of the drug resistance response of sensitive and drug-resistant strains in a microfluidic system X Jiang, Y Kang, X Pan, J Yu, Q Ouyang, C Luo Integrative Biology 6 (2), 143-151, 2014 | 21 | 2014 |
Accurate positioning of functional residues with robotics-inspired computational protein design C Krivacic, K Kundert, X Pan, RA Pache, L Liu, S O Conchúir, ... Proceedings of the National Academy of Sciences 119 (11), e2115480119, 2022 | 9 | 2022 |
De novo protein fold families expand the designable ligand binding site space X Pan, T Kortemme PLoS computational biology 17 (11), e1009620, 2021 | 3 | 2021 |
A platform for multimodal in vivo pooled genetic screens reveals regulators of liver function RA Saunders, WE Allen, X Pan, J Sandhu, J Lu, TK Lau, K Smolyar, ... bioRxiv, 2024.11. 18.624217, 2024 | 1 | 2024 |
Precise Design of Protein Structures X Pan University of California, San Francisco, 2020 | 1 | 2020 |