Hiroyuki Ogata

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Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Didier RaoultIHU Méditerranée Infection, Aix Marseille Université, AP-HM CHU Timone, Marseille, FRANCEVerified email at univ-amu.fr
Stephane AudicSARL RoskodingVerified email at roskoding.fr
Pierre-Edouard FournierVITROME, IHU Mediterranee-Infection, Aix-Marseille University, Marseille, FranceVerified email at univ-amu.fr
Hidemasa BonoGraduate School of Integrated Sciences for Life, Hiroshima UniversityVerified email at hiroshima-u.ac.jp
Pascal HingampAssociate Professor, Aix Marseille University, FranceVerified email at univ-amu.fr
Yosuke NishimuraCeBN, Japan Agency for Marine-Earth Science and TechnologyVerified email at jamstec.go.jp
Guillaume BlancCNRS/Aix-Marseille University/Mediterranean Institute of OceanographyVerified email at mio.osupytheas.fr
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Karsenti EricSenior scientist EMBLVerified email at embl.de
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Adam MonierRoyal Society University Research Fellow, University of ExeterVerified email at exeter.ac.uk
Michael (Mike) AllenExeter UniversityVerified email at exeter.ac.uk
Camille ClerissiEPHE CRIOBE USR3278Verified email at ephe.sorbonne.fr
Yves DesdevisesupmcVerified email at obs-banyuls.fr
Gunnar BratbakProfessor in Microbiology, University of BergenVerified email at uib.no
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Hugo SarmentoProfessor, Universidade Federal de São Carlos (Brazil) - Dept. HidrobiologiaVerified email at ufscar.br
Gipsi Lima MendezU.NamurVerified email at uclouvain.be

Hiroyuki Ogata

Institute for Chemical Research, Kyoto University

Verified email at kuicr.kyoto-u.ac.jp - Homepage

Bioinformatics Evolution Ecology


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KEGG: Kyoto encyclopedia of genes and genomes H Ogata, S Goto, K Sato, W Fujibuchi, H Bono, M Kanehisa Nucleic acids research 27 (1), 29-34, 1999	5634	1999
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	2623	2015
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015	1884	2015
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold T Aramaki, R Blanc-Mathieu, H Endo, K Ohkubo, M Kanehisa, S Goto, ... Bioinformatics 36 (7), 2251-2252, 2020	1421	2020
The 1.2-megabase genome sequence of Mimivirus D Raoult, S Audic, C Robert, C Abergel, P Renesto, H Ogata, B La Scola, ... Science 306 (5700), 1344-1350, 2004	1208	2004
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii PE Fournier, D Vallenet, V Barbe, S Audic, H Ogata, L Poirel, H Richet, ... PLoS genetics 2 (1), e7, 2006	1111	2006
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	929	2015
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	792	2016
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	727	2015
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	721	2019
ViPTree: the viral proteomic tree server Y Nishimura, T Yoshida, M Kuronishi, H Uehara, H Ogata, S Goto Bioinformatics 33 (15), 2379-2380, 2017	685	2017
AAindex: amino acid index database S Kawashima, H Ogata, M Kanehisa Nucleic acids research 27 (1), 368-369, 1999	569	1999
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	562	2019
Pan genome of the phytoplankton Emiliania underpins its global distribution BA Read, J Kegel, MJ Klute, A Kuo, SC Lefebvre, F Maumus, C Mayer, ... Nature 499 (7457), 209-213, 2013	544	2013
Mechanisms of evolution in Rickettsia conorii and R. prowazekii H Ogata, S Audic, P Renesto-Audiffren, PE Fournier, V Barbe, D Samson, ... Science 293 (5537), 2093-2098, 2001	532	2001
Patterns of rare and abundant marine microbial eukaryotes R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ... Current Biology 24 (8), 813-821, 2014	493	2014
A holistic approach to marine eco-systems biology E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ... PLoS biology 9 (10), e1001177, 2011	485	2011
Open science resources for the discovery and analysis of Tara Oceans data S Pesant, F Not, M Picheral, S Kandels-Lewis, N Le Bescot, G Gorsky, ... Scientific data 2 (1), 1-16, 2015	423	2015
Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ... Environmental microbiology 17 (10), 4035-4049, 2015	412	2015
Linking virus genomes with host taxonomy T Mihara, Y Nishimura, Y Shimizu, H Nishiyama, G Yoshikawa, H Uehara, ... Viruses 8 (3), 66, 2016	396	2016

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