| 3D jet writing of mechanically actuated tandem scaffolds S Moon, MS Jones, E Seo, J Lee, L Lahann, JH Jordahl, KJ Lee, ... Science advances 7 (16), eabf5289, 2021 | 40 | 2021 |
| Determining sequence-dependent DNA oligonucleotide hybridization and dehybridization mechanisms using coarse-grained molecular simulation, markov state models, and infrared … MS Jones, B Ashwood, A Tokmakoff, AL Ferguson Journal of the American Chemical Society 143 (42), 17395-17411, 2021 | 29 | 2021 |
| DiAMoNDBack: Diffusion-Denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces MS Jones, K Shmilovich, AL Ferguson Journal of Chemical Theory and Computation 19 (21), 7908-7923, 2023 | 16 | 2023 |
| Disruption of energetic and dynamic base-pairing cooperativity in DNA duplexes by an abasic site B Ashwood, MS Jones, AL Ferguson, A Tokmakoff Biophysical Journal 123 (3), 459a-460a, 2024 | 13 | 2024 |
| Thermodynamics and kinetics of DNA and RNA dinucleotide hybridization to gaps and overhangs B Ashwood, MS Jones, A Radakovic, S Khanna, Y Lee, JR Sachleben, ... Biophysical Journal 122 (16), 3323-3339, 2023 | 12 | 2023 |
| Aligned Networks of Engineered Fibrillar Fibronectin Guide Cellular Orientation and Motility DB Neale, AJ Muñiz, MS Jones, DH Kim, JM Buschhaus, BA Humphries, ... Small Structures, 2000137, 2021 | 12 | 2021 |
| Molecular Latent Space Simulators for Distributed and Multimolecular Trajectories MS Jones, ZA McDargh, RP Wiewiora, JA Izaguirre, H Xu, AL Ferguson The Journal of Physical Chemistry A 127 (25), 5470-5490, 2023 | 7 | 2023 |
| Molecular insight into how the position of an abasic site modifies DNA duplex stability and dynamics B Ashwood, MS Jones, Y Lee, JR Sachleben, AL Ferguson, A Tokmakoff Biophysical Journal 123 (2), 118-133, 2024 | 6 | 2024 |
| FlowBack: A Generalized Flow-Matching Approach for Biomolecular Backmapping MS Jones, S Khanna, AL Ferguson Journal of Chemical Information and Modeling, 2025 | 1 | 2025 |
| Direct monitoring of the thermodynamics and kinetics of DNA and RNA dinucleotide dehybridization from gaps and overhangs B Ashwood, MS Jones, A Radakovic, S Khanna, Y Lee, JR Sachleben, ... bioRxiv, 2023 | 1 | 2023 |
| Tutorial on Molecular Latent Space Simulators (LSSs): Spatially and Temporally Continuous Data-Driven Surrogate Dynamical Models of Molecular Systems MS Jones, K Shmilovich, AL Ferguson The Journal of Physical Chemistry A 128 (47), 10299-10317, 2024 | | 2024 |
| FlowBack: A Flow-matching Approach for Generative Backmapping of Macromolecules M Jones, S Khanna, A Ferguson ICML'24 Workshop ML for Life and Material Science: From Theory to Industry …, 2024 | | 2024 |
| Multi-Multimolecular Latent Space Simulations of DNA Hairpin-Duplex Competition M Jones, A Ferguson 2022 AIChE Annual Meeting, 2022 | | 2022 |
| Understanding DNA Hybridization through Thermodynamics and Kinetics of Abasic Oligomers M Jones, B Ashwood, A Tokmakoff, A Ferguson 2022 AIChE Annual Meeting, 2022 | | 2022 |
| Characterizing the Impact of Abasic Sites on Sequence-Dependent DNA Duplex Dehybridization with Temperature-Jump IR Spectroscopy and Coarse-Grained Molecular Simulation B Ashwood, M Jones, A Ferguson, A Tokmakoff APS March Meeting Abstracts 2022, B25. 011, 2022 | | 2022 |
| Understanding sequence-dependent DNA dynamics through self-associative machine learning and temperature-jump spectroscopy MS Jones, B Ashwood, A Tokmakoff, AL Ferguson Bulletin of the American Physical Society, 2021 | | 2021 |
