| Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives SM Gygli, S Borrell, A Trauner, S Gagneux FEMS Microbiology Reviews 41 (3), 354-373, 2017 | 488 | 2017 |
| Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19 F D’Agnillo, KA Walters, Y Xiao, ZM Sheng, K Scherler, J Park, S Gygli, ... Science Translational Medicine 13 (620), eabj7790, 2021 | 211 | 2021 |
| Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity F Menardo, C Loiseau, D Brites, M Coscolla, SM Gygli, LK Rutaihwa, ... BMC bioinformatics 19 (1), 1-8, 2018 | 134 | 2018 |
| Whole-Genome Sequencing for Drug Resistance Profile Prediction in Mycobacterium tuberculosis SM Gygli, PM Keller, M Ballif, N Blöchliger, R Hömke, M Reinhard, ... Antimicrobial agents and chemotherapy 63 (4), e02175-18, 2019 | 82 | 2019 |
| Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis SM Gygli, C Loiseau, L Jugheli, N Adamia, A Trauner, M Reinhard, ... Nature Medicine, 1-7, 2021 | 70 | 2021 |
| Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019 | 59 | 2019 |
| Multiple introductions of Mycobacterium tuberculosis lineage 2–Beijing into Africa over centuries LK Rutaihwa, F Menardo, D Stucki, SM Gygli, SD Ley, B Malla, ... Frontiers in ecology and evolution 7, 112, 2019 | 50 | 2019 |
| Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim F Menardo, LK Rutaihwa, M Zwyer, S Borrell, I Comas, EC Conceição, ... F1000Research 10, 2021 | 37 | 2021 |
| Population Genomics of Francisella tularensis subsp. holarctica and its Implication on the Eco-Epidemiology of Tularemia in Switzerland M Wittwer, E Altpeter, P Pilo, SM Gygli, C Beuret, F Foucault, ... Frontiers in Cellular and Infection Microbiology 8, 89, 2018 | 34 | 2018 |
| The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot C Loiseau, EM Windels, SM Gygli, L Jugheli, N Maghradze, D Brites, ... Nature Communications 14 (1), 1988, 2023 | 32 | 2023 |
| An inactivated multivalent influenza A virus vaccine is broadly protective in mice and ferrets J Park, SL Fong Legaspi, LM Schwartzman, SM Gygli, ZM Sheng, ... Science Translational Medicine 14 (653), eabo2167, 2022 | 18 | 2022 |
| Expression dysregulation as a mediator of fitness costs in antibiotic resistance A Trauner, A Banaei-Esfahani, SM Gygli, P Warmer, J Feldmann, ... Antimicrobial agents and chemotherapy 65 (9), e00504-21, 2021 | 9 | 2021 |
| Resource misallocation as a mediator of fitness costs in antibiotic resistance. A Trauner, A Banaei-Esfahani, SM Gygli, P Warmer, J Feldmann, ... bioRxiv, 456434, 2018 | 4 | 2018 |
| Network analysis identifies regulators of lineage-specific phenotypes in Mycobacterium tuberculosis A Banaei-Esfahani, A Trauner, S Borrell, SM Gygli, TR Rustad, ... bioRxiv, 2020 | 1 | 2020 |
| Evolution of antimicrobial resistance in Mycobacterium tuberculosis studied in the field and the laboratory SM Gygli University_of_Basel, 2018 | 1 | 2018 |
Sebastien GagneuxSwiss Tropical and Public Health InstituteVerified email at swisstph.ch
