| Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak SK Gire, A Goba, KG Andersen, RSG Sealfon, DJ Park, L Kanneh, ... science 345 (6202), 1369-1372, 2014 | 1569 | 2014 |
| Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ... Annals of Oncology 31 (6), 745-759, 2020 | 1168 | 2020 |
| A survey of error-correction methods for next-generation sequencing X Yang, SP Chockalingam, S Aluru Briefings in Bioinformatics 14 (1), 56-66, 2013 | 335 | 2013 |
| STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ... BioRxiv, 120295, 2017 | 252 | 2017 |
| De novo assembly of highly diverse viral populations X Yang, P Charlebois, S Gnerre, MG Coole, NJ Lennon, JZ Levin, J Qu, ... BMC genomics 13, 1-13, 2012 | 237 | 2012 |
| Reptile: representative tiling for short read error correction X Yang, KS Dorman, S Aluru Bioinformatics 26 (20), 2526, 2010 | 196 | 2010 |
| ATHLATES: accurate typing of human leukocyte antigen through exome sequencing C Liu, X Yang, B Duffy, T Mohanakumar, RD Mitra, MC Zody, JD Pfeifer Nucleic acids research 41 (14), e142-e142, 2013 | 189 | 2013 |
| Long-term engraftment and fetal globin induction upon BCL11A gene editing in bone-marrow-derived CD34+ hematopoietic stem and progenitor cells KH Chang, SE Smith, T Sullivan, K Chen, Q Zhou, JA West, M Liu, Y Liu, ... Molecular Therapy-Methods & Clinical Development 4, 137-148, 2017 | 183 | 2017 |
| V-Phaser 2: variant inference for viral populations X Yang, P Charlebois, A Macalalad, MR Henn, MC Zody BMC genomics 14, 1-10, 2013 | 137 | 2013 |
| High-throughput DNA sequence data compression Z Zhu, Y Zhang, Z Ji, S He, X Yang Briefings in bioinformatics 16 (1), 1-15, 2015 | 105 | 2015 |
| Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification CM Malboeuf, X Yang, P Charlebois, J Qu, AM Berlin, M Casali, KN Pesko, ... Nucleic acids research 41 (1), e13-e13, 2013 | 92 | 2013 |
| Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa MH Stremlau, KG Andersen, OA Folarin, JN Grove, I Odia, PE Ehiane, ... PLoS neglected tropical diseases 9 (3), e0003631, 2015 | 77 | 2015 |
| Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence … YH Grad, R Newman, M Zody, X Yang, R Murphy, J Qu, CM Malboeuf, ... Journal of virology 88 (13), 7286-7293, 2014 | 65 | 2014 |
| Parallel de novo assembly of large genomes from high-throughput short reads BG Jackson, M Regennitter, X Yang, PS Schnable, S Aluru 2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010 | 62 | 2010 |
| Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ... Journal of virology 90 (2), 862-872, 2016 | 58 | 2016 |
| PARALLEL-TCOFFEE: A parallel multiple sequence aligner. J Zola, X Yang, A Rospondek, S Aluru PDCS, 248-253, 2007 | 58 | 2007 |
| Light-weight reference-based compression of FASTQ data Y Zhang, L Li, Y Yang, X Yang, S He, Z Zhu BMC bioinformatics 16, 1-8, 2015 | 45 | 2015 |
| High-resolution HLA typing by long reads from the R10. 3 Oxford nanopore flow cells C Liu, X Yang, BF Duffy, J Hoisington-Lopez, ML Crosby, ... Human Immunology 82 (4), 288-295, 2021 | 42 | 2021 |
| Repeat-aware modeling and correction of short read errors X Yang, S Aluru, K Dorman BMC Bioinformatics 12 (Suppl 1), S52, 2011 | 39 | 2011 |
| Parallel metagenomic sequence clustering via sketching and maximal quasi-clique enumeration on map-reduce clouds X Yang, J Zola, S Aluru 2011 IEEE International Parallel & Distributed Processing Symposium, 1223-1233, 2011 | 36 | 2011 |
Srinivas AluruRegents' Professor and Senior Associate Dean, College of Computing, Georgia TechVerified email at cc.gatech.edu