| Gut microbiota and colonization resistance against bacterial enteric infection QR Ducarmon, RD Zwittink, BVH Hornung, W Van Schaik, VB Young, ... Microbiology and Molecular Biology Reviews 83 (3), 10.1128/mmbr. 00007-19, 2019 | 478 | 2019 |
| Fecal microbiota transplantation in neurological disorders KEW Vendrik, RE Ooijevaar, PRC De Jong, JD Laman, BW Van Oosten, ... Frontiers in cellular and infection microbiology 10, 98, 2020 | 352 | 2020 |
| Use of shotgun metagenomics and metabolomics to evaluate the impact of glyphosate or Roundup MON 52276 on the gut microbiota and serum metabolome of Sprague-Dawley rats R Mesnage, M Teixeira, D Mandrioli, L Falcioni, QR Ducarmon, ... Environmental health perspectives 129 (1), 017005, 2021 | 161* | 2021 |
| Multi-omics phenotyping of the gut-liver axis reveals metabolic perturbations from a low-dose pesticide mixture in rats R Mesnage, M Teixeira, D Mandrioli, L Falcioni, M Ibragim, QR Ducarmon, ... Communications Biology 4 (1), 471, 2021 | 43 | 2021 |
| The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile MJT Crobach, QR Ducarmon, EM Terveer, C Harmanus, IMJG Sanders, ... Microorganisms 8 (5), 677, 2020 | 41 | 2020 |
| Toward standards in clinical microbiota studies: comparison of three DNA extraction methods and two bioinformatic pipelines QR Ducarmon, BVH Hornung, AR Geelen, EJ Kuijper, RD Zwittink Msystems 5 (1), 10.1128/msystems. 00547-19, 2020 | 38 | 2020 |
| proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ... Nucleic acids research 51 (D1), D760-D766, 2023 | 31 | 2023 |
| Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control … QR Ducarmon, RD Zwittink, RPJ Willems, A Verhoeven, S Nooij, ... The Lancet Microbe 3 (6), e443-e451, 2022 | 29 | 2022 |
| Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home QR Ducarmon, EM Terveer, S Nooij, MN Bloem, KEW Vendrik, ... Genome Medicine 13, 1-17, 2021 | 28 | 2021 |
| Fecal microbiota transplantation influences procarcinogenic Escherichia coli in recipient recurrent Clostridioides difficile patients S Nooij, QR Ducarmon, JFJ Laros, RD Zwittink, JM Norman, WK Smits, ... Gastroenterology 161 (4), 1218-1228. e5, 2021 | 28 | 2021 |
| Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins R Mesnage, RCE Bowyer, S El Balkhi, F Saint-Marcoux, A Gardere, ... Environmental Health 21 (1), 46, 2022 | 27 | 2022 |
| Opportunities and challenges in development of live biotherapeutic products to fight infections QR Ducarmon, EJ Kuijper, B Olle The Journal of infectious diseases 223 (Supplement_3), S283-S289, 2021 | 27 | 2021 |
| Gut microbiota and dietary intake of normal-weight and overweight Filipino children MJ Golloso-Gubat, QR Ducarmon, RCA Tan, RD Zwittink, EJ Kuijper, ... Microorganisms 8 (7), 1015, 2020 | 26 | 2020 |
| Remodelling of the intestinal ecosystem during caloric restriction and fasting QR Ducarmon, F Grundler, Y Le Maho, FW de Toledo, G Zeller, C Habold, ... Trends in Microbiology 31 (8), 832-844, 2023 | 17 | 2023 |
| Response to:‘Circulating microbiome in blood of different circulatory compartments’ by Schierwagen et al BVH Hornung, RD Zwittink, QR Ducarmon, EJ Kuijper Gut 69 (4), 789-790, 2020 | 16 | 2020 |
| Clostridioides difficile infection with isolates of cryptic clade C-II: a genomic analysis of polymerase chain reaction ribotype 151 QR Ducarmon, T van der Bruggen, C Harmanus, IMJG Sanders, ... Clinical Microbiology and Infection 29 (4), 538. e1-538. e6, 2023 | 13 | 2023 |
| Dynamics of the bacterial gut microbiota during controlled human infection with Necator americanus larvae QR Ducarmon, MA Hoogerwerf, JJ Janse, AR Geelen, JPR Koopman, ... Gut Microbes 12 (1), 1840764, 2020 | 11 | 2020 |
| Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent … S Nooij, KEW Vendrik, RD Zwittink, QR Ducarmon, JJ Keller, EJ Kuijper, ... Genome Medicine 16 (1), 37, 2024 | 7 | 2024 |
| Sequence-based identification of metronidazole-resistant Clostridioides difficile isolates WK Smits, C Harmanus, IMJG Sanders, L Bry, GA Blackwell, ... Emerging infectious diseases 28 (11), 2308, 2022 | 6 | 2022 |
| Colibactin mutational signatures in NTHL1 tumor syndrome and MUTYH associated polyposis patients D Terlouw, A Boot, QR Ducarmon, S Nooij, MA Jessurun, ... Genes, Chromosomes and Cancer 63 (1), e23208, 2024 | 5* | 2024 |
Ed J. KuijperHoogleraar bacteriologieVerified email at lumc.nl