Rupert A. Collins

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Martin GennerSchool of Biological Sciences, University of BristolVerified email at bristol.ac.uk
Rob CruickshankChristchurch City LibrariesVerified email at ccc.govt.nz
Stefano MarianiLiverpool John Moores UniversityVerified email at ljmu.ac.uk
David W. SimsProfessor of Marine Ecology, Marine Biological Association Lab and University of Southampton, UKVerified email at mba.ac.uk
Owen S. WangensteenDpt. of Evolutionary Biology, Ecology & Environmental Sciences, University of BarcelonaVerified email at ub.edu
Tomas HrbekAssociate Professor of Genetics, Federal University of AmazonasVerified email at ufam.edu.br
Samuel D. J. BrownApplied Entomology group, Plant and Food ResearchVerified email at plantandfood.co.nz
Karen ArmstrongSenior Researcher, Lincoln University, NZVerified email at lincoln.ac.nz
Stephane BoyerUniversité de ToursVerified email at univ-tours.fr
Marie-Caroline LefortPostdoctoral Fellow @ Lincoln University (NZ) - Lecturer @ Unitec Institute of Technology (NZ)Verified email at lincolnuni.ac.nz
Izeni Pires FariasUniversidade Federal do AmazonasVerified email at ufam.edu.br
Eoin O'GormanUniversity of EssexVerified email at essex.ac.uk
Cor J VinkLincoln UniversityVerified email at lincoln.ac.nz
Jennifer Jean FreerBritish Antarctic SurveyVerified email at bas.ac.uk
Andrade, MarceloProfessor do Curso de Ciências Naturais, Universidade do Estado do Amapá - UEAPVerified email at ueap.edu.br
Judith Bakker, PhDFlorida International UniversityVerified email at naturemetrics.co.uk
Eric MorganProfessor, Queen's University BelfastVerified email at qub.ac.uk
Laura Boykin OkaleboAmazon Web Services (AWS)Verified email at bioteam.net
Louise A RutterfordCefasVerified email at cefas.gov.uk
Steve SimpsonProfessor of Marine Biology & Global Change, University of BristolVerified email at bristol.ac.uk

Rupert A. Collins

Natural History Museum, London

Verified email at nhm.ac.uk

ichthyology biodiversity taxonomy phylogenetics ecology


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The seven deadly sins of DNA barcoding RA Collins, RH Cruickshank Molecular Ecology Resources 13 (6), 969-975, 2013	674	2013
Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding SDJ Brown, RA Collins, S Boyer, MC Lefort, J Malumbres-Olarte, CJ Vink, ... Molecular Ecology Resources 12 (3), 562-565, 2012	563	2012
Persistence of environmental DNA in marine systems RA Collins, OS Wangensteen, EJ O’Gorman, S Mariani, DW Sims, ... Communications Biology 1 (1), 185, 2018	419	2018
Non‐specific amplification compromises environmental DNA metabarcoding with COI RA Collins, J Bakker, OS Wangensteen, AZ Soto, L Corrigan, DW Sims, ... Methods in Ecology and Evolution, 10.1111/2041‐210X.13276, 2019	303	2019
Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification RA Collins, LM Boykin, RH Cruickshank, KF Armstrong Methods in Ecology and Evolution 3 (3), 457-465, 2012	242	2012
Barcoding and border biosecurity: identifying cyprinid fishes in the aquarium trade RA Collins, KF Armstrong, R Meier, Y Yi, SDJ Brown, RH Cruickshank, ... PLoS ONE 7 (1), e28381, 2012	209	2012
Climate change drives poleward increases and equatorward declines in marine species RA Hastings, LA Rutterford, JJ Freer, RA Collins, SD Simpson, MJ Genner Current Biology 30 (8), 1572-1577. e2, 2020	206	2020
Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA RA Collins, KF Armstrong, AJ Holyoake, S Keeling Biological Invasions 15 (6), 1209-1215, 2013	79	2013
One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon VN Machado, RA Collins, RP Ota, MC Andrade, IP Farias, T Hrbek Scientific Reports 8 (1), 8387, 2018	78	2018
Known knowns, known unknowns, unknown unknowns and unknown knowns in DNA barcoding: a comment on Dowton et al. RA Collins, RH Cruickshank Systematic Biology 63 (6), 1005-1009, 2014	58	2014
Sliding window analyses for optimal selection of mini-barcodes, and application to 454-pyrosequencing for specimen identification from degraded DNA S Boyer, SDJ Brown, RA Collins, RH Cruickshank, MC Lefort, ... PLoS ONE 7 (5), e38215, 2012	57	2012
Meta‐fish‐lib: A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes RA Collins, G Trauzzi, KM Maltby, TI Gibson, FC Ratcliffe, J Hallam, ... Journal of Fish Biology 99 (4), 1446-1454, 2021	54	2021
Schistosoma species detection by environmental DNA assays in African freshwaters H Alzaylaee, RA Collins, G Rinaldi, A Shechonge, B Ngatunga, ... PLoS Neglected Tropical Diseases 14 (3), e0008129, 2020	40*	2020
An in silico comparison of protocols for dated phylogenomics RA Collins, T Hrbek Systematic Biology 64 (4), 633-650, 2018	40*	2018
Phylogenetic systematics of leaffishes (Teleostei: Polycentridae, Nandidae) RA Collins, R Britz, L Rüber Journal of Zoological Systematics and Evolutionary Research 53 (4), 259-272, 2015	40	2015
Environmental DNA-based xenomonitoring for determining Schistosoma presence in tropical freshwaters H Alzaylaee, RA Collins, A Shechonge, BP Ngatunga, ER Morgan, ... Parasites & Vectors 13 (1), 1-11, 2020	30	2020
Integrative taxonomy reveals a new species of pacu (Characiformes: Serrasalmidae: Myloplus) from the Brazilian Amazon RP Ota, VN Machado, MC Andrade, RA Collins, IP Farias, T Hrbek Neotropical Ichthyology 18 (01), e190112, 2020	22	2020
Environmental DNA captures elasmobranch diversity in a temperate marine ecosystem Z Liu, RA Collins, C Baillie, S Rainbird, R Brittain, AM Griffiths, DW Sims, ... Environmental DNA 4 (5), 1024-1038, 2022	21	2022
Estuarine molecular bycatch as a landscape-wide biomonitoring tool S Mariani, LR Harper, RA Collins, C Baillie, OS Wangensteen, ... Biological Conservation 261, 109287, 2021	21	2021
Aquatic organisms research with DNA barcodes M Elias-Gutierrez, N Hubert, RA Collins, C Andrade-Sossa Diversity 13 (7), 306, 2021	20	2021

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