| MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu Bioinformatics 33 (24), 3909-3916, 2017 | 252 | 2017 |
| MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization D Wang, D Liu, J Yuchi, F He, Y Jiang, S Cai, J Li, D Xu Nucleic Acids Research 48 (W1), W140-W146, 2020 | 223 | 2020 |
| DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism D Wang, Z Zhang, Y Jiang, Z Mao, D Wang, H Lin, D Xu Nucleic acids research 49 (8), e46-e46, 2021 | 134 | 2021 |
| Phenotype prediction and genome-wide association study using deep convolutional neural network of soybean Y Liu, D Wang, F He, J Wang, T Joshi, D Xu Frontiers in genetics 10, 1091, 2019 | 130 | 2019 |
| Capsule network for protein post-translational modification site prediction D Wang, Y Liang, D Xu Bioinformatics 35 (14), 2386-2394, 2019 | 117 | 2019 |
| RNALocate v2. 0: an updated resource for RNA subcellular localization with increased coverage and annotation T Cui, Y Dou, P Tan, Z Ni, T Liu, DL Wang, Y Huang, K Cai, X Zhao, D Xu, ... Nucleic acids research 50 (D1), D333-D339, 2022 | 92 | 2022 |
| Single-cell biological network inference using a heterogeneous graph transformer A Ma, X Wang, J Li, C Wang, T Xiao, Y Liu, H Cheng, J Wang, Y Li, ... Nature Communications 14 (1), 964, 2023 | 89 | 2023 |
| MULocDeep: a deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation Y Jiang, D Wang, Y Yao, H Eubel, P Künzler, IM Møller, D Xu Computational and structural biotechnology journal 19, 4825-4839, 2021 | 78 | 2021 |
| Diffusion models in bioinformatics and computational biology Z Guo, J Liu, Y Wang, M Chen, D Wang, D Xu, J Cheng Nature reviews bioengineering 2 (2), 136-154, 2024 | 77 | 2024 |
| 3′ UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network L Li, D Wang, M Xue, X Mi, Y Liang, P Wang Scientific reports 4 (1), 5406, 2014 | 66 | 2014 |
| G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers S Zeng, Z Mao, Y Ren, D Wang, D Xu, T Joshi Nucleic acids research 49 (W1), W228-W236, 2021 | 28 | 2021 |
| Computational methods for protein localization prediction Y Jiang, D Wang, W Wang, D Xu Computational and Structural Biotechnology Journal 19, 5834-5844, 2021 | 26 | 2021 |
| Deep learning detection of inaccurate smart electricity meters: A case study M Liu, D Liu, G Sun, Y Zhao, D Wang, F Liu, X Fang, Q He, D Xu IEEE Industrial Electronics Magazine 14 (4), 79-90, 2020 | 25 | 2020 |
| Diffusion models in bioinformatics: A new wave of deep learning revolution in action Z Guo, J Liu, Y Wang, M Chen, D Wang, D Xu, J Cheng arXiv preprint arXiv:2302.10907, 2023 | 24 | 2023 |
| CircRNAFisher: a systematic computational approach for de novo circular RNA identification G Jia, D Wang, M Xue, Y Liu, Y Pei, Y Yang, J Xu, Y Liang, P Wang Acta Pharmacologica Sinica 40 (1), 55-63, 2019 | 24 | 2019 |
| Application of deep learning in genomic selection Y Liu, D Wang 2017 ieee international conference on bioinformatics and biomedicine (bibm …, 2017 | 22 | 2017 |
| DeepDom: predicting protein domain boundary from sequence alone using stacked bidirectional LSTM Y Jiang, D Wang, D Xu Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 24, 66, 2019 | 19 | 2019 |
| MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels Y Jiang, L Jiang, CS Akhil, D Wang, Z Zhang, W Zhang, D Xu Nucleic Acids Research 51 (W1), W343-W349, 2023 | 16 | 2023 |
| Mice lacking uterine enhancer of zeste homolog 2 have transcriptomic changes associated with uterine epithelial proliferation AM Mesa, J Mao, MK Nanjappa, TI Medrano, S Tevosian, F Yu, J Kinkade, ... Physiological Genomics 52 (2), 81-95, 2020 | 16 | 2020 |
| S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure D Wang, M Pourmirzaei, UL Abbas, S Zeng, N Manshour, F Esmaili, ... bioRxiv, 2023.08. 06.552203, 2023 | 15 | 2023 |
Dong XuCurators’ Distinguished Professor, University of MissouriVerified email at missouri.edu
