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Yuanfei Pan
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Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential
J Wang, Y Pan, L Yang, W Yang, K Lv, C Luo, J Wang, G Kuang, W Wu, ...
Nature Communications 14 (1), 4079, 2023
502023
Rapid evolution of latitudinal clines in growth and defence of an invasive weed
Y Yang, M Liu, Y Pan, H Huang, X Pan, A Sosa, Y Hou, Z Zhu, B Li
New Phytologist 230 (2), 845-856, 2021
332021
Using artificial intelligence to document the hidden RNA virosphere
X Hou, Y He, P Fang, SQ Mei, Z Xu, WC Wu, JH Tian, S Zhang, ZY Zeng, ...
Cell 187 (24), 6929-6942. e16, 2024
242024
Plant invasion alters latitudinal pattern of plant‐defense syndromes
M Liu, Y Pan, X Pan, A Sosa, DM Blumenthal, M Van Kleunen, B Li
Ecology 102 (12), e03511, 2021
162021
Artificial intelligence redefines RNA virus discovery
M Shi, X Hou, Y He, P Fang, SQ Mei, Z Xu, WC Wu, J Tian, S Zhang, ...
142023
Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity
YF Pan, H Zhao, QY Gou, PB Shi, JH Tian, Y Feng, K Li, WH Yang, D Wu, ...
Nature Ecology & Evolution 8 (5), 947-959, 2024
102024
Hierarchical metacommunity structure of fungal endophytes
Y Pan, M Liu, A Sosa, B Li, M Shi, X Pan
New Phytologist 239 (4), 1464-1474, 2023
92023
LucaOne: Generalized Biological Foundation Model with Unified Nucleic Acid and Protein Language
Y He, P Fang, Y Shan, Y Pan, Y Wei, Y Chen, Y Chen, Y Liu, Z Zeng, ...
bioRxiv, 2024.05. 10.592927, 2024
62024
Individual bat viromes reveal the co-infection, spillover and emergence risk of potential zoonotic viruses
J Wang, Y Pan, L Yang, W Yang, C Luo, J Wang, G Kuang, W Wu, Q Gou, ...
bioRxiv, 2022.11. 23.517609, 2022
52022
Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses
Y Pan, H Zhao, Q Gou, P Shi, J Tian, Y Feng, K Li, W Yang, D Wu, G Tang, ...
bioRxiv, 2023
42023
From competition to cooperation: Kin selection against selfish shade avoidance behaviour promotes plant invasions
L Chen, Y Pan, X Pan, L Yu, A Sosa, J Yang, B Li
Journal of Ecology 111 (3), 645-654, 2023
22023
Interactive effect matters: a combination of herbivory degree and the ratio of generalist to specialist better predicts evolution of plant defense
Y Pan, X Pan, LDB Faria, B Li
bioRxiv, 2022.01. 13.476260, 2022
22022
Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
WC Wu, YF Pan, WD Zhou, YQ Liao, MW Peng, GY Luo, GY Xin, YN Peng, ...
Msphere 9 (8), e00439-24, 2024
12024
Plant-soil feedbacks differ between native and introduced populations of Alternanthera philoxeroides
S Shen, Y Pan, L Chen, Y Tu, X Pan
Biodiversity Science 31 (3), 22436, 2023
12023
Infectome analysis of bat kidneys from Yunnan province, China, reveals close relatives of Hendra-Nipah viruses and prevalent bacterial and eukaryotic pathogens
G Kuang, T Yang, W Yang, J Wang, H Pan, Y Pan, Q Gou, W Wu, J Wang, ...
bioRxiv, 2025.01. 10.632301, 2025
2025
Small mammals in a biodiversity hotspot harbor viruses of emergence risk
Y Feng, G Kuang, Y Pan, J Wang, W Yang, W Wu, H Pan, J Wang, X Han, ...
National Science Review, nwae463, 2024
2024
VirID: Beyond Virus Discovery—An Integrated Platform for Comprehensive RNA Virus Characterization
Z Yang, Y Shan, X Liu, G Chen, Y Pan, Q Gou, J Zou, Z Chang, Q Zeng, ...
Molecular Biology and Evolution 41 (10), msae202, 2024
2024
Small mammals in biodiversity hotspot harbor viruses of epidemic potential
Y Feng, G Kuang, Y Pan, J Wang, W Yang, W Wu, H Pan, J Wang, X Han, ...
bioRxiv, 2024.09. 10.612213, 2024
2024
SegFinder: an automated tool for identifying RNA virus genome segments through co-occurrence in multiple sequenced samples
X Liu, J Kong, Y Shan, Z Yang, J Miao, Y Pan, T Luo, Z Shi, Y Wang, ...
bioRxiv, 2024.08. 19.608591, 2024
2024
The specialist-to-generalist ratio affects growth and defense strategy of invasive plant Alternanthera philoxeroides
Y Sun, Y Pan, M Liu, X Pan
Biodiversity Science 31 (4), 22632, 2023
2023
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