| SynthStrip: skull-stripping for any brain image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 260, 119474, 2022 | 234 | 2022 |
| Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning A Hering, L Hansen, TCW Mok, ACS Chung, H Siebert, S Häger, A Lange, ... IEEE Transactions on Medical Imaging 42 (3), 697-712, 2022 | 206 | 2022 |
| Hypermorph: Amortized hyperparameter learning for image registration A Hoopes, M Hoffmann, B Fischl, J Guttag, AV Dalca Information Processing in Medical Imaging: 27th International Conference …, 2021 | 153 | 2021 |
| The brain tumor sequence registration challenge: establishing correspondence between pre-operative and follow-up MRI scans of diffuse glioma patients B Baheti, D Waldmannstetter, S Chakrabarty, H Akbari, M Bilello, ... arXiv preprint arXiv:2112.06979, 2021 | 56 | 2021 |
| A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images DN Greve, B Billot, D Cordero, A Hoopes, M Hoffmann, AV Dalca, B Fischl, ... NeuroImage 244, 118610, 2021 | 49 | 2021 |
| PSACNN: Pulse sequence adaptive fast whole brain segmentation A Jog, A Hoopes, DN Greve, K Van Leemput, B Fischl NeuroImage 199, 553-569, 2019 | 42 | 2019 |
| Learning the effect of registration hyperparameters with hypermorph A Hoopes, M Hoffmann, DN Greve, B Fischl, J Guttag, AV Dalca The journal of machine learning for biomedical imaging 1, 2022 | 40 | 2022 |
| TopoFit: rapid reconstruction of topologically-correct cortical surfaces A Hoopes, JE Iglesias, B Fischl, D Greve, AV Dalca Proceedings of machine learning research 172, 508, 2022 | 25 | 2022 |
| An open-source tool for longitudinal whole-brain and white matter lesion segmentation S Cerri, DN Greve, A Hoopes, H Lundell, HR Siebner, M Mühlau, ... NeuroImage: Clinical 38, 103354, 2023 | 18 | 2023 |
| Anatomy-specific acquisition-agnostic affine registration learned from fictitious images M Hoffmann, A Hoopes, B Fischl, AV Dalca Medical Imaging 2023: Image Processing 12464, 1246402, 2023 | 17 | 2023 |
| Anatomy-aware and acquisition-agnostic joint registration with synthmorph M Hoffmann, A Hoopes, DN Greve, B Fischl, AV Dalca Imaging Neuroscience, 2024 | 16 | 2024 |
| A longitudinal method for simultaneous whole-brain and lesion segmentation in multiple sclerosis S Cerri, A Hoopes, DN Greve, M Mühlau, K Van Leemput Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro …, 2020 | 15 | 2020 |
| Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels S Hong, AK Bonkhoff, A Hoopes, M Bretzner, MD Schirmer, AK Giese, ... arXiv preprint arXiv:2112.06693, 2021 | 9 | 2021 |
| VoxelPrompt: A Vision-Language Agent for Grounded Medical Image Analysis A Hoopes, VI Butoi, JV Guttag, AV Dalca arXiv preprint arXiv:2410.08397, 2024 | 4 | 2024 |
| Synthetic data in generalizable, learning-based neuroimaging K Gopinath, A Hoopes, DC Alexander, SE Arnold, Y Balbastre, B Billot, ... Imaging Neuroscience 2, 1-22, 2024 | 2 | 2024 |
Adrian V DalcaHarvard Medical School & Massachusetts Institute of TechnologyVerified email at mit.edu