Jacob Beal

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Mirko ViroliFull Professor of Computer Science, Università di BolognaVerified email at unibo.it
Ron WeissProfessor of Biological Engineering, Massachusetts Institute of TechnologyVerified email at mit.edu
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Danilo PianiniSenior assistant professor (fixed-term), Alma Mater Studiorum Università di BolognaVerified email at unibo.it
Aaron AdlerBBN TechnologiesVerified email at bbn.com
Bryan BartleyScientistVerified email at sbolstandard.org
Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Ferruccio DamianiFull Professor of Compurer Science, University of TorinoVerified email at di.unito.it
Goksel MisirliSenior Lecturer, Keele UniversityVerified email at keele.ac.uk
Jonathan Bachrachadjunct assistant professor of computer science, uc berkeley universityVerified email at eecs.berkeley.edu
Matthew PocockComputing Science, Newcastle UniversityVerified email at ncl.ac.uk
Nicholas RoehnerRaytheon BBN TechnologiesVerified email at raytheon.com
Giorgio AudritoResearch fellowVerified email at unito.it
Ernst OberortnerTakara Bio USAVerified email at takarabio.com
Douglas DensmoreTegan Family Distinguished Fellow, Professor of Electrical and Computer Eng., Boston UniversityVerified email at bu.edu
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Kyle UsbeckSkydioVerified email at skydio.com
Traci HaddockPostdoctoral Research Associate, Boston UniversityVerified email at bu.edu
Soura DasguptaF Wendell Miller University of Iowa Foundation Distinguished Professor of ECEVerified email at engineering.uiowa.edu
Tramy NguyenRaytheon BBN TechnologiesVerified email at raytheon.com

Jacob Beal

Raytheon BBN

Verified email at bbn.com - Homepage

aggregate programming synthetic biology calibrated flow cytometry spatial computing engineered self-organization


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Cas9 gRNA engineering for genome editing, activation and repression S Kiani, A Chavez, M Tuttle, RN Hall, R Chari, D Ter-Ovanesyan, J Qian, ... Nature methods 12 (11), 1051-1054, 2015	377	2015
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014	334	2014
Aggregate programming for the internet of things J Beal, D Pianini, M Viroli Computer 48 (9), 22-30, 2015	256	2015
Infrastructure for engineered emergence on sensor/actuator networks J Beal, J Bachrach IEEE Intelligent Systems 21 (2), 10-19, 2006	255	2006
CRISPR transcriptional repression devices and layered circuits in mammalian cells S Kiani, J Beal, MR Ebrahimkhani, J Huh, RN Hall, Z Xie, Y Li, R Weiss Nature methods 11 (7), 723-726, 2014	243	2014
Robust estimation of bacterial cell count from optical density J Beal, NG Farny, T Haddock-Angelli, V Selvarajah, GS Baldwin, ... Communications biology 3 (1), 512, 2020	214	2020
CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology SV Iverson, TL Haddock, J Beal, DM Densmore ACS synthetic biology 5 (1), 99-103, 2016	208	2016
Organizing the aggregate: Languages for spatial computing J Beal, S Dulman, K Usbeck, M Viroli, N Correll Formal and Practical Aspects of Domain-Specific Languages: Recent …, 2013	177	2013
Protelis: practical aggregate programming D Pianini, M Viroli, J Beal Proceedings of the 30th Annual ACM Symposium on Applied Computing, 1846-1853, 2015	147	2015
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks J Beal, T Lu, R Weiss PloS one 6 (8), e22490, 2011	136	2011
Robotic fabricator AM Mozeika, A Adler, F Yaman-Sirin, J Beal US Patent App. 13/530,664, 2013	125	2013
Engineering resilient collective adaptive systems by self-stabilisation M Viroli, G Audrito, J Beal, F Damiani, D Pianini ACM Transactions on Modeling and Computer Simulation (TOMACS) 28 (2), 1-28, 2018	121	2018
An end-to-end workflow for engineering of biological networks from high-level specifications J Beal, R Weiss, D Densmore, A Adler, E Appleton, J Babb, S Bhatia, ... ACS synthetic biology 1 (8), 317-331, 2012	112	2012
Composable continuous-space programs for robotic swarms J Bachrach, J Beal, J McLurkin Neural Computing and Applications 19, 825-847, 2010	110	2010
A higher-order calculus of computational fields G Audrito, M Viroli, F Damiani, D Pianini, J Beal ACM Transactions on Computational Logic (TOCL) 20 (1), 1-55, 2019	101	2019
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016	101	2016
SBOL visual: a graphical language for genetic designs JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ... PLoS biology 13 (12), e1002310, 2015	98	2015
From distributed coordination to field calculus and aggregate computing M Viroli, J Beal, F Damiani, G Audrito, R Casadei, D Pianini Journal of Logical and Algebraic Methods in Programming 109, 100486, 2019	97	2019
Methods and apparatus for energy demand management JS Beal, JR Bachrach US Patent 8,271,147, 2012	93	2012
Quantification of bacterial fluorescence using independent calibrants J Beal, T Haddock-Angelli, G Baldwin, M Gershater, A Dwijayanti, ... PloS one 13 (6), e0199432, 2018	83	2018

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