| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 466* | 2020 |
| Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints BJ Sánchez, C Zhang, A Nilsson, PJ Lahtvee, EJ Kerkhoven, J Nielsen Molecular systems biology 13 (8), 935, 2017 | 454 | 2017 |
| RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor H Wang, S Marcišauskas, BJ Sánchez, I Domenzain, D Hermansson, ... PLoS computational biology 14 (10), e1006541, 2018 | 357 | 2018 |
| A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ... Nature communications 10 (1), 3586, 2019 | 341 | 2019 |
| Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism J Zhang, SD Petersen, T Radivojevic, A Ramirez, A Pérez-Manríquez, ... Nature communications 11 (1), 4880, 2020 | 249 | 2020 |
| Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast PJ Lahtvee, BJ Sánchez, A Smialowska, S Kasvandik, IE Elsemman, ... Cell systems 4 (5), 495-504. e5, 2017 | 199 | 2017 |
| Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0 I Domenzain, B Sánchez, M Anton, EJ Kerkhoven, A Millán-Oropeza, ... Nature communications 13 (1), 3766, 2022 | 111 | 2022 |
| Genome scale models of yeast: towards standardized evaluation and consistent omic integration BJ Sánchez, J Nielsen Integrative Biology 7 (8), 846-858, 2015 | 83 | 2015 |
| Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae OP Ishchuk, I Domenzain, BJ Sánchez, F Muñiz-Paredes, JL Martínez, ... Proceedings of the National Academy of Sciences 119 (30), e2108245119, 2022 | 68 | 2022 |
| Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation J Xia, BJ Sánchez, Y Chen, K Campbell, S Kasvandik, J Nielsen Nature Communications 13 (1), 2819, 2022 | 58 | 2022 |
| Model-assisted fine-tuning of central carbon metabolism in yeast through dCas9-based regulation R Ferreira, C Skrekas, A Hedin, BJ Sánchez, V Siewers, J Nielsen, ... ACS Synthetic Biology 8 (11), 2457-2463, 2019 | 56 | 2019 |
| SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework BJ Sánchez, F Li, EJ Kerkhoven, J Nielsen BMC systems biology 13, 1-9, 2019 | 54 | 2019 |
| Construction of robust dynamic genome-scale metabolic model structures of Saccharomyces cerevisiae through iterative re-parameterization BJ Sánchez, JR Pérez-Correa, E Agosin Metabolic engineering 25, 159-173, 2014 | 42 | 2014 |
| Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism V Mol, M Bennett, BJ Sánchez, BK Lisowska, MJ Herrgård, AT Nielsen, ... Metabolic Engineering 65, 123-134, 2021 | 20 | 2021 |
| Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae BJ Sánchez, PJ Lahtvee, K Campbell, S Kasvandik, R Yu, I Domenzain, ... Proteomics 21 (6), 2000093, 2021 | 20 | 2021 |
| From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry ST Karlsen, MH Rau, BJ Sánchez, K Jensen, AA Zeidan FEMS Microbiology Reviews 47 (4), fuad030, 2023 | 12 | 2023 |
| DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii C Navarrete, BJ Sánchez, S Savickas, JL Martínez Microbial Biotechnology 15 (4), 1133-1151, 2022 | 11 | 2022 |
| HIPPO: An iterative reparametrization method for identification and calibration of dynamic bioreactor models of complex processes BJ Sanchez, DC Soto, H Jorquera, CA Gelmi, JR Perez-Correa Industrial & Engineering Chemistry Research 53 (48), 18514-18525, 2014 | 11 | 2014 |
| standard-GEM: standardization of open-source genome-scale metabolic models M Anton, E Almaas, R Benfeitas, S Benito-Vaquerizo, LM Blank, A Dräger, ... bioRxiv, 2023.03. 21.512712, 2023 | 8 | 2023 |
| Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott, UW Liebal, LM Blank, ... Molecular Systems Biology 20 (10), 1134-1150, 2024 | 7* | 2024 |
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se