| Curcumin-decorated nanoliposomes with very high affinity for amyloid-β1-42 peptide S Mourtas, M Canovi, C Zona, D Aurilia, A Niarakis, B La Ferla, ... Biomaterials 32 (6), 1635-1645, 2011 | 280 | 2011 |
| Effect of curcumin-associated and lipid ligand-functionalized nanoliposomes on aggregation of the Alzheimer's Aβ peptide M Taylor, S Moore, S Mourtas, A Niarakis, F Re, C Zona, B La Ferla, ... Nanomedicine: Nanotechnology, Biology and Medicine 7 (5), 541-550, 2011 | 188 | 2011 |
| COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ... Scientific data 7 (1), 136, 2020 | 152 | 2020 |
| Uptake and permeability studies of BBB-targeting immunoliposomes using the hCMEC/D3 cell line E Markoutsa, G Pampalakis, A Niarakis, IA Romero, B Weksler, ... European journal of pharmaceutics and biopharmaceutics 77 (2), 265-274, 2011 | 152 | 2011 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 94 | 2021 |
| Building digital twins of the human immune system: toward a roadmap R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ... NPJ digital medicine 5 (1), 64, 2022 | 93 | 2022 |
| Automated inference of Boolean models from molecular interaction maps using CaSQ SS Aghamiri, V Singh, A Naldi, T Helikar, S Soliman, A Niarakis Bioinformatics, 2020 | 70 | 2020 |
| Community-driven roadmap for integrated disease maps M Ostaszewski, S Gebel, I Kuperstein, A Mazein, A Zinovyev, U Dogrusoz, ... Briefings in bioinformatics 20 (2), 659-670, 2019 | 69 | 2019 |
| Boolean modelling as a logic-based dynamic approach in systems medicine AA Hemedan, A Niarakis, R Schneider, M Ostaszewski Computational and Structural Biotechnology Journal 20, 3161-3172, 2022 | 40 | 2022 |
| RA-map: Building a state-of-the-art interactive knowledge base for rheumatoid arthritis AN Vidisha Singh, George D Kalliolias, Marek Ostaszewski, Maëva Veyssiere ... Database 2020 (2020), 2020 | 38 | 2020 |
| A practical guide to mechanistic systems modeling in biology using a logic-based approach A Niarakis, T Helikar Briefings in bioinformatics 22 (4), bbaa236, 2021 | 29 | 2021 |
| Metabolic Reprogramming of Fibroblasts as Therapeutic Target in Rheumatoid Arthritis and Cancer: Deciphering Key Mechanisms Using Computational Systems Biology Approaches S Aghakhani, N Zerrouk, A Niarakis Cancers 13 (1), 35, 2021 | 27 | 2021 |
| Computational systems biology approach for the study of rheumatoid arthritis: from a molecular map to a dynamical model V Singh, M Ostaszewski, GD Kalliolias, G Chiocchia, R Olaso, ... Genomics and computational biology 4 (1), e100050, 2017 | 27 | 2017 |
| Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference N Zerrouk, Q Miagoux, A Dispot, M Elati, A Niarakis Scientific reports 10 (1), 16236, 2020 | 24 | 2020 |
| Computational modeling of the main signaling pathways involved in mast cell activation A Niarakis, Y Bounab, L Grieco, R Roncagalli, AM Hesse, J Garin, ... Fc Receptors, Current Topics in Microbiology and Immunology, 69-93, 2014 | 23 | 2014 |
| Proteomic analysis of the SH2domain-containing leukocyte protein of 76 kDa (SLP76) interactome Y Bounab, B Iannascoli, L Grieco, Y Couté, A Niarakis, R Roncagalli, ... Molecular & Cellular Proteomics 12 (10), 2874-2889, 2013 | 23* | 2013 |
| Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology A Niarakis, D Waltemath, J Glazier, F Schreiber, SM Keating, D Nickerson, ... Briefings in bioinformatics 23 (4), bbac212, 2022 | 22 | 2022 |
| Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop A Niarakis, M Kuiper, M Ostaszewski, RS Malik Sheriff, C Casals-Casas, ... Briefings in bioinformatics 22 (2), 1848-1859, 2021 | 21 | 2021 |
| The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling V Touré, Å Flobak, A Niarakis, S Vercruysse, M Kuiper Briefings in Bioinformatics 22 (4), bbaa390, 2021 | 19 | 2021 |
| Data integration in logic-based models of biological mechanisms B Hall, A Niarakis Current Opinion in Systems Biology 28, 2021 | 18 | 2021 |
Tomas HelikarEberhard Professor, Department of Biochemistry, University of Nebraska - LincolnVerified email at unl.edu