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A multimodal cell census and atlas of the mammalian primary motor cortex RS Adkins, AI Aldridge, S Allen, SA Ament, X An, E Armand, GA Ascoli, ... Nature 598 (7879), 86, 2021 | 363* | 2021 |
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Deciphering eukaryotic gene-regulatory logic with 100 million random promoters CG de Boer, ED Vaishnav, R Sadeh, EL Abeyta, N Friedman, A Regev Nature biotechnology 38 (1), 56-65, 2020 | 278 | 2020 |
The evolution, evolvability and engineering of gene regulatory DNA ED Vaishnav, CG de Boer, J Molinet, M Yassour, L Fan, X Adiconis, ... Nature, 1-9, 2022 | 202 | 2022 |
Actomyosin meshwork mechanosensing enables tissue shape to orient cell force S Chanet, CJ Miller, ED Vaishnav, B Ermentrout, LA Davidson, AC Martin Nature communications 8 (1), 15014, 2017 | 144 | 2017 |
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ... Nature cell biology, 1-12, 2023 | 82 | 2023 |
Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF) C Comiter, ED Vaishnav, M Ciampricotti, B Li, Y Yang, SJ Rodig, M Turner, ... BioRxiv, 2023.03. 21.533680, 2023 | 28 | 2023 |
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain Y Zhang, JA Miller, J Park, BP Lelieveldt, B Long, T Abdelaal, ... Scientific Reports 13 (1), 9567, 2023 | 19* | 2023 |
SpaceTx: a roadmap for benchmarking spatial transcriptomics exploration of the brain B Long, J Miller, ..., ED Vaishnav, ..., TST Consortium arXiv preprint arXiv:2301.08436, 2023 | 16 | 2023 |
A community effort to optimize sequence-based deep learning models of gene regulation AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ... Nature biotechnology, 1-11, 2024 | 9* | 2024 |
Tx-LLM: A Large Language Model for Therapeutics JMZ Chaves, E Wang, T Tu, ED Vaishnav, B Lee, SS Mahdavi, C Semturs, ... arXiv preprint arXiv:2406.06316, 2024 | 7 | 2024 |
A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences ED Vaishnav, CG de Boer, M Yassour, J Molinet, L Fan, X Adiconis, ... bioRxiv, 2021 | 6 | 2021 |
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