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Marina Haukness
Marina Haukness
Graduate Student, UC Santa Cruz
Verified email at ucsc.edu
Title
Cited by
Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
25772022
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
6132023
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
4802020
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
3792022
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
2682023
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
D Porubsky, P Ebert, PA Audano, MR Vollger, WT Harvey, P Marijon, ...
Nature biotechnology 39 (3), 302-308, 2021
1612021
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
1532022
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
WC Warren, RA Harris, M Haukness, IT Fiddes, SC Murali, J Fernandes, ...
Science 370 (6523), eabc6617, 2020
1352020
A high-quality bonobo genome refines the analysis of hominid evolution
Y Mao, CR Catacchio, LDW Hillier, D Porubsky, R Li, A Sulovari, ...
Nature 594 (7861), 77-81, 2021
692021
Haplotype-aware diplotyping from noisy long reads
J Ebler, M Haukness, T Pesout, T Marschall, B Paten
Genome biology 20, 1-16, 2019
682019
Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
BioRxiv, 715722, 2019
47*2019
Structurally divergent and recurrently mutated regions of primate genomes
Y Mao, WT Harvey, D Porubsky, KM Munson, K Hoekzema, AP Lewis, ...
Cell 187 (6), 1547-1562. e13, 2024
302024
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome research 33 (4), 496-510, 2023
292023
A fully phased accurate assembly of an individual human genome
D Porubsky, P Ebert, PA Audano, MR Vollger, WT Harvey, KM Munson, ...
bioRxiv, 855049, 2019
242019
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
HJ Lee, SU Greer, DS Pavlichin, B Zhou, AE Urban, T Weissman, ...
Cell Reports Methods 3 (8), 2023
52023
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch)
M Escalona, J VanCampen, NW Maurer, M Haukness, M Okhovat, ...
Journal of Heredity 114 (1), 35-43, 2023
42023
Haplotype-aware genotyping from noisy long reads-Supplementary material
J Ebler, M Haukness, T Pesout, T Marschall, B Paten
12018
GIAB Benchmarking of HG002 Assemblies from HPRC Year 1 Bakeoff
W Harvey, M Haukness, A Hastie, P Ebert, J Wood, M Kirsche, ...
National Institute of Standards and Technology (NIST), 2022
2022
Using long reads to improve haplotype phasing, genome assembly, and gene annotation
M Haukness
University of California, Santa Cruz, 2022
2022
Better Data for Better Health
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
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Articles 1–20