A review of protein-small molecule docking methods RD Taylor, PJ Jewsbury, JW Essex Journal of computer-aided molecular design 16, 151-166, 2002 | 1045 | 2002 |
Permeation of small molecules through a lipid bilayer: a computer simulation study D Bemporad, JW Essex, C Luttmann The Journal of Physical Chemistry B 108 (15), 4875-4884, 2004 | 346 | 2004 |
Classification of water molecules in protein binding sites C Barillari, J Taylor, R Viner, JW Essex Journal of the American Chemical Society 129 (9), 2577-2587, 2007 | 334 | 2007 |
Prediction of protein–ligand binding affinity by free energy simulations: assumptions, pitfalls and expectations J Michel, JW Essex Journal of computer-aided molecular design 24, 639-658, 2010 | 295 | 2010 |
The development of replica-exchange-based free-energy methods CJ Woods, JW Essex, MA King The Journal of Physical Chemistry B 107 (49), 13703-13710, 2003 | 223 | 2003 |
The ELBA force field for coarse-grain modeling of lipid membranes M Orsi, JW Essex PloS one 6 (12), e28637, 2011 | 210 | 2011 |
Computer simulation of small molecule permeation across a lipid bilayer: dependence on bilayer properties and solute volume, size, and cross-sectional area D Bemporad, C Luttmann, JW Essex Biophysical journal 87 (1), 1-13, 2004 | 206 | 2004 |
Permeability of small molecules through a lipid bilayer: a multiscale simulation study M Orsi, WE Sanderson, JW Essex The Journal of Physical Chemistry B 113 (35), 12019-12029, 2009 | 197 | 2009 |
Atomic charges for variable molecular conformations CA Reynolds, JW Essex, WG Richards Journal of the American Chemical Society 114 (23), 9075-9079, 1992 | 197 | 1992 |
An analysis of the feasibility of short read sequencing N Whiteford, N Haslam, G Weber, A Prügel-Bennett, JW Essex, PL Roach, ... Nucleic acids research 33 (19), e171-e171, 2005 | 185 | 2005 |
Permeability of drugs and hormones through a lipid bilayer: insights from dual-resolution molecular dynamics M Orsi, JW Essex Soft Matter 6 (16), 3797-3808, 2010 | 174 | 2010 |
A quantitative coarse-grain model for lipid bilayers M Orsi, DY Haubertin, WE Sanderson, JW Essex The Journal of Physical Chemistry B 112 (3), 802-815, 2008 | 170 | 2008 |
Ensemble docking into multiple crystallographically derived protein structures: an evaluation based on the statistical analysis of enrichments IR Craig, JW Essex, K Spiegel Journal of chemical information and modeling 50 (4), 511-524, 2010 | 167 | 2010 |
Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity DJ Huggins, PC Biggin, MA Dämgen, JW Essex, SA Harris, ... Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (3), e1393, 2019 | 165 | 2019 |
Behaviour of small solutes and large drugs in a lipid bilayer from computer simulations D Bemporad, C Luttmann, JW Essex Biochimica et Biophysica Acta (BBA)-Biomembranes 1718 (1-2), 1-21, 2005 | 157 | 2005 |
Fluoride-selective binding in a new deep cavity calix [4] pyrrole: Experiment and theory CJ Woods, S Camiolo, ME Light, SJ Coles, MB Hursthouse, MA King, ... Journal of the American Chemical Society 124 (29), 8644-8652, 2002 | 146 | 2002 |
On the calculation of acyl chain order parameters from lipid simulations TJ Piggot, JR Allison, RB Sessions, JW Essex Journal of chemical theory and computation 13 (11), 5683-5696, 2017 | 144 | 2017 |
Water Network Perturbation in Ligand Binding: Adenosine A2A Antagonists as a Case Study A Bortolato, BG Tehan, MS Bodnarchuk, JW Essex, JS Mason Journal of chemical information and modeling 53 (7), 1700-1713, 2013 | 139 | 2013 |
Monte Carlo simulations for proteins: Binding affinities for trypsin− benzamidine complexes via free-energy perturbations JW Essex, DL Severance, J Tirado-Rives, WL Jorgensen The Journal of Physical Chemistry B 101 (46), 9663-9669, 1997 | 138 | 1997 |
Anisotropic elastic network modeling of entire microtubules MA Deriu, M Soncini, M Orsi, M Patel, JW Essex, FM Montevecchi, ... Biophysical journal 99 (7), 2190-2199, 2010 | 130 | 2010 |