| Simulation studies of amyloidogenic polypeptides and their aggregates IM Ilie, A Caflisch Chemical reviews 119 (12), 6956-6993, 2019 | 177 | 2019 |
| An elementary singularity-free rotational brownian dynamics algorithm for anisotropic particles IM Ilie, WJ Briels, WK den Otter The Journal of chemical physics 142 (11), 2015 | 47 | 2015 |
| A coarse grained protein model with internal degrees of freedom. Application to α-synuclein aggregation IM Ilie, WK den Otter, WJ Briels The Journal of chemical physics 144 (8), 2016 | 40 | 2016 |
| Thermostable designed ankyrin repeat proteins (DARPins) as building blocks for innovative drugs J Schilling, C Jost, IM Ilie, J Schnabl, O Buechi, RS Eapen, R Truffer, ... Journal of Biological Chemistry 298 (1), 2022 | 31 | 2022 |
| Intrinsic conformational preferences and interactions in α-synuclein fibrils: insights from molecular dynamics simulations IM Ilie, D Nayar, WK Den Otter, NFA Van Der Vegt, WJ Briels Journal of chemical theory and computation 14 (6), 3298-3310, 2018 | 30 | 2018 |
| Disorder at the tips of a disease-relevant Aβ42 amyloid fibril: A molecular dynamics study IM Ilie, A Caflisch The Journal of Physical Chemistry B 122 (49), 11072-11082, 2018 | 27 | 2018 |
| Flanking sequence preference modulates de novo DNA methylation in the mouse genome I Mallona, IM Ilie, ID Karemaker, S Butz, M Manzo, A Caflisch, T Baubec Nucleic acids research 49 (1), 145-157, 2021 | 25 | 2021 |
| Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions S García-Viñuales, IM Ilie, AM Santoro, V Romanucci, A Zarrelli, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1870 (5), 140772, 2022 | 22 | 2022 |
| Rotational Brownian dynamics simulations of clathrin cage formation IM Ilie, WK den Otter, WJ Briels The Journal of chemical physics 141 (6), 2014 | 19 | 2014 |
| The attachment of α-synuclein to a fiber: A coarse-grain approach IM Ilie, WK den Otter, WJ Briels The Journal of chemical physics 146 (11), 2017 | 17 | 2017 |
| Unlocking novel therapies: Cyclic peptide design for amyloidogenic targets through synergies of experiments, simulations, and machine learning D de Raffele, IM Ilie Chemical Communications 60 (6), 632-645, 2024 | 12 | 2024 |
| The role of the N-terminal amphipathic helix in bacterial YidC: Insights from functional studies, the crystal structure and molecular dynamics simulations KJ Nass, IM Ilie, MJ Saller, AJM Driessen, A Caflisch, RA Kammerer, X Li Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (3), 183825, 2022 | 11 | 2022 |
| Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration G Giubertoni, L Feng, K Klein, G Giannetti, L Rutten, Y Choi, ... Proceedings of the National Academy of Sciences 121 (11), e2313162121, 2024 | 6 | 2024 |
| Decrypting integrins by mixed-solvent molecular dynamics simulations IM Ilie, C Ehrhardt, A Caflisch, G Weitz-Schmidt Journal of Chemical Information and Modeling 63 (12), 3878-3891, 2023 | 6 | 2023 |
| Interactions of Curcumin’s Degradation Products with the Aβ42 Dimer: A Computational Study MH Dehabadi, A Caflisch, IM Ilie, R Firouzi The Journal of Physical Chemistry B 126 (39), 7627-7637, 2022 | 6 | 2022 |
| Antibody binding modulates the dynamics of the membrane-bound prion protein IM Ilie, M Bacci, A Vitalis, A Caflisch Biophysical Journal 121 (14), 2813-2825, 2022 | 6 | 2022 |
| Antibody binding increases the flexibility of the prion protein IM Ilie, A Caflisch Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1870 (11-12), 140827, 2022 | 3 | 2022 |
| Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF− Y C Durukan, F Arbore, R Klintrot, C Bigiotti, IM Ilie, J Vreede, ... ChemBioChem 25 (9), e202400020, 2024 | 2 | 2024 |
| Metaparticles: Computationally engineered nanomaterials with tunable and responsive properties M Paesani, IM Ilie The Journal of Chemical Physics 161 (24), 2024 | | 2024 |
| Structural adaptability and surface activity of peptides derived from tardigrade proteins G Giubertoni, S Chagri, PG Argudo, L Prädel, D Maltseva, A Greco, ... Protein Science 33 (9), e5135, 2024 | | 2024 |
Amedeo CaflischDepartment of Biochemistry, University of ZurichVerified email at bioc.uzh.ch