| Cellpose: a generalist algorithm for cellular segmentation C Stringer, T Wang, M Michaelos, M Pachitariu Nature methods 18 (1), 100-106, 2021 | 2612 | 2021 |
| Fully integrated silicon probes for high-density recording of neural activity JJ Jun, NA Steinmetz, JH Siegle, DJ Denman, M Bauza, B Barbarits, ... Nature 551 (7679), 232-236, 2017 | 2072 | 2017 |
| Spontaneous behaviors drive multidimensional, brainwide activity C Stringer, M Pachitariu, N Steinmetz, CB Reddy, M Carandini, KD Harris Science 364 (6437), 255, 2019 | 1402 | 2019 |
| Kilosort: realtime spike-sorting for extracellular electrophysiology with hundreds of channels M Pachitariu, N Steinmetz, S Kadir, M Carandini, KD Harris BioRxiv, 2016 | 1090* | 2016 |
| Suite2p: beyond 10,000 neurons with standard two-photon microscopy M Pachitariu, C Stringer, S Schröder, M Dipoppa, LF Rossi, M Carandini, ... BioRxiv, 061507, 2016 | 900 | 2016 |
| Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings NA Steinmetz, C Aydin, A Lebedeva, M Okun, M Pachitariu, M Bauza, ... Science 372 (6539), eabf4588, 2021 | 888 | 2021 |
| Cellpose 2.0: how to train your own model M Pachitariu, C Stringer Nature methods 19 (12), 1634-1641, 2022 | 665 | 2022 |
| High-dimensional geometry of population responses in visual cortex C Stringer, M Pachitariu, N Steinmetz, M Carandini, KD Harris Nature, 1, 2019 | 584 | 2019 |
| Survey of spiking in the mouse visual system reveals functional hierarchy JH Siegle, X Jia, S Durand, S Gale, C Bennett, N Graddis, G Heller, ... Nature 592 (7852), 86-92, 2021 | 510* | 2021 |
| Learning enhances sensory and multiple non-sensory representations in primary visual cortex J Poort, AG Khan, M Pachitariu, A Nemri, I Orsolic, J Krupic, M Bauza, ... Neuron 86 (6), 1478-1490, 2015 | 458 | 2015 |
| Thirst regulates motivated behavior through modulation of brainwide neural population dynamics WE Allen, MZ Chen, N Pichamoorthy, RH Tien, M Pachitariu, L Luo, ... Science 364 (6437), eaav3932, 2019 | 368 | 2019 |
| Toroidal topology of population activity in grid cells RJ Gardner, E Hermansen, M Pachitariu, Y Burak, NA Baas, BA Dunn, ... Nature 602 (7895), 123-128, 2022 | 331 | 2022 |
| Vision and locomotion shape the interactions between neuron types in mouse visual cortex M Dipoppa, A Ranson, M Krumin, M Pachitariu, M Carandini, KD Harris Neuron 98 (3), 602-615. e8, 2018 | 312 | 2018 |
| Robustness of spike deconvolution for neuronal calcium imaging M Pachitariu, C Stringer, KD Harris Journal of Neuroscience 38 (37), 7976-7985, 2018 | 188* | 2018 |
| Spike sorting with Kilosort4 M Pachitariu, S Sridhar, J Pennington, C Stringer Nature Methods, 1-8, 2024 | 179* | 2024 |
| High-precision coding in visual cortex C Stringer, M Michaelos, D Tsyboulski, SE Lindo, M Pachitariu Cell 184 (10), 2767-2778. e15, 2021 | 165 | 2021 |
| State-dependent population coding in primary auditory cortex M Pachitariu, DR Lyamzin, M Sahani, NA Lesica Journal of Neuroscience 35 (5), 2058-2073, 2015 | 165 | 2015 |
| Community-based benchmarking improves spike rate inference from two-photon calcium imaging data P Berens, J Freeman, T Deneux, N Chenkov, T McColgan, A Speiser, ... PLoS computational biology 14 (5), e1006157, 2018 | 153 | 2018 |
| Computational processing of neural recordings from calcium imaging data C Stringer, M Pachitariu Current opinion in neurobiology 55, 22-31, 2019 | 138 | 2019 |
| Arousal modulates retinal output S Schröder, NA Steinmetz, M Krumin, M Pachitariu, M Rizzi, L Lagnado, ... Neuron 107 (3), 487-495. e9, 2020 | 118* | 2020 |
Carsen StringerGroup Leader, HHMI Janelia Research CampusVerified email at janelia.hhmi.org