| A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics Q Song, B Decato, EE Hong, M Zhou, F Fang, J Qu, T Garvin, M Kessler, ... PloS one 8 (12), e81148, 2013 | 402 | 2013 |
| lncRNA requirements for mouse acute myeloid leukemia and normal differentiation MJ Delas, LR Sabin, E Dolzhenko, SRV Knott, E Munera Maravilla, ... Elife 6, e25607, 2017 | 65 | 2017 |
| MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation J Qu, M Zhou, Q Song, EE Hong, AD Smith Bioinformatics 29 (20), 2645-2646, 2013 | 63 | 2013 |
| Enhancers reside in a unique epigenetic environment during early zebrafish development LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven, ASJ Melquiond, ... Genome biology 17, 1-15, 2016 | 45 | 2016 |
| CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human B Qin, M Zhou, Y Ge, L Taing, T Liu, Q Wang, S Wang, J Chen, L Shen, ... Bioinformatics 28 (10), 1411-1412, 2012 | 40 | 2012 |
| Contrasting levels of molecular evolution on the mouse X chromosome EL Larson, D Vanderpool, S Keeble, M Zhou, BAJ Sarver, AD Smith, ... Genetics 203 (4), 1841-1857, 2016 | 38 | 2016 |
| Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ... Cell reports 34 (5), 2021 | 34 | 2021 |
| CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data Q Cao, M Zhou, X Wang, CA Meyer, Y Zhang, Z Chen, C Li, XS Liu Nucleic acids research 39 (suppl_1), D968-D974, 2011 | 28 | 2011 |
| Subtype classification and functional annotation of L1Md retrotransposon promoters M Zhou, AD Smith Mobile DNA 10, 1-15, 2019 | 23 | 2019 |
| Associations between Maternal Tobacco Smoke Exposure and the Cord Blood DNA Methylome CG Howe, M Zhou, X Wang, GS Pittman, IJ Thompson, MR Campbell, ... Environmental Health Perspectives 127 (4), 047009, 2019 | 19 | 2019 |
| Patterns of structural variation define prostate cancer across disease states M Zhou, M Ko, ACH Hoge, K Luu, Y Liu, ML Russell, WW Hannon, ... JCI insight 7 (17), 2022 | 15 | 2022 |
| Whole genome sequencing reveals the independent clonal origin of multifocal ileal neuroendocrine tumors N Mäkinen, M Zhou, Z Zhang, Y Kasai, E Perez, GE Kim, C Thirlwell, ... Genome medicine 14 (1), 82, 2022 | 15 | 2022 |
| XRN1 deletion induces PKR-dependent cell lethality in interferon-activated cancer cells T Zou, M Zhou, A Gupta, P Zhuang, AR Fishbein, HY Wei, ... Cell reports 43 (2), 2024 | 7 | 2024 |
| Genomic evolution in a patient with lung adenocarcinoma with a germline EGFR T790M mutation N Mäkinen, M Zhou, M Bemus, J Nevin, A Nag, R Chen, YL Colson, ... JTO Clinical and Research Reports 2 (4), 100146, 2021 | 4 | 2021 |
| The Smithlab DNA Methylation Data Analysis Pipeline (MethPipe) Q Song, B Decato, M Kessler, F Fang, J Qu, T Garvin, M Zhou, A Smith | 3 | 2021 |
| lncRNA requirements for mouse acute myeloid leukemia and normal differentiation DM Joaquina, LR Sabin, D Egor, KS RV, MM Ester, BT Jackson, SA Wild, ... Elife 6, 2017 | 3 | 2017 |
| Genomic analyses of multifocal ileal neuroendocrine tumors N Makinen, M Zhou, Z Zhang, Y Kasai, GE Kim, C Thirlwell, E Nakakura, ... Endocrine Abstracts 98, 2023 | | 2023 |
| Independent clonal origins of synchronous primary tumors in multifocal ileal neuroendocrine tumor patients N MÄKINEN, M Zhou, Z Zhang, Y Kasai, E Perez, GE Kim, C Thirlwell, ... Cancer Research 82 (12_Supplement), 46-46, 2022 | | 2022 |
| Detection, Classification and Functional Annotation of Mouse L1 Retrotransposon Promoters M Zhou University of Southern California, 2018 | | 2018 |
| Section: Population and evolutionary genetics EL Larson, D Vanderpool, S Keeble, M Zhou, BAJ Sarver, AD Smith, ... | | 2016 |
Andrew D SmithProfessor of Biological Sciences, University of Southern CaliforniaVerified email at smithlabresearch.org